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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatcccttcctttgttggtgttactacccacataacatggatttcaaatggagaattttagactgtgaaggccaactaacttaaccgccaacataactaaccctgttgatcataacagGAAATGAAGGAGCAAGGAGTGACAGAGGACAGGCTCCAATTGCTTCGGGATGTAACGGGTGCATTCAGGCCTGGAGTCCTCACTGCACTGATGGGAGTCA

Basic information

species Vitis vinifera
transcript Vv09s0002g03640.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA13G43140.1 (Glycine max), 3'ss of exon 14
gtaagaatcccttcctttgttggtgttactacccacataacatggatttcaaatggagaattttagactgtgaaggccaactaacttaaccgccaacataactaaccctgttgatcataacagGAAATGAAGGAGCAAGGAGTGACAGAGGACAGGCTCCAATTGCTTCGGGATGTAACGGGTGCATTCAGGCCTGGAGTCCTCACTGCACTGATGGGAGTCA
                        || |  ||||   || ||    |||| |||  | || || | |||   |     ||     |||   |  || ||||   |     |   |  |||||||||||||| | ||||||||||||||| || ||||| ||||| ||| |||| || || ||||| || |||||||||||  | |||||  | |||||||| |
------------------------gtaagaaccc---tatcacttttttccaat--ataacttcatactaccattcataa-----ttagtggtaaatataaaggaagtgttaacttttaacagGAAATGAAAGGGCAAGGAGTGACAGATGATAGGCTACAATTACTTAGGGAAGTTACTGGTGCCTTTAGGCCTGGAGTTTTAACTGCTTTAATGGGAGTTA

upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA07G01860.1 (Glycine max), 3'ss of exon 15
gtaagaatcccttcc--tttgttggtgttactacccacataacatggatttcaaatggagaattttagactgtgaaggccaactaacttaaccgccaacataactaaccctgttgatcataacagGAAATGAAGGAGCAAGGAGTGACAGAGGACAGGCTCCAATTGCTTCGGGATGTAACGGGTGCATTCAGGCCTGGAGTCCTCACTGCACTGATGGGAGTCA
||||| ||||  |||  ||| ||| |     || |  |||||  |  ||     ||  | |||     || ||| |  || || ||   ||            || || ||| | |   | |||||||||||  || |||||||||||||| || ||||| ||| ||||| |||  |||||  || | || |||||||||||||| |||||||| |||||||| |
gtaaggatccaatccaatttcttgtttagtataacttcataatctatatc----attaacaatcc---acggtgta--cctacaaaggaaatt----------ctgactctgataacttttacagGAAATGAGAGATCAAGGAGTGACAGAAGATAGGCTACAACTGCTTAGGGGAGTAACTAGTTCCTTTAGGCCTGGAGTCCTAACTGCACTAATGGGAGTTA

upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA15G02220.1 (Glycine max), 3'ss of exon 15
gtaagaatcccttcctttgttggtgttactacccacataacatggatttcaaatg-gagaattttagactgtgaaggccaactaacttaaccgccaacataactaaccctgttgatcataacagGAAATGAAGGAGCAAGGAGTGACAGAGGACAGGCTCCAATTGCTTCGGGATGTAACGGGTGCATTCAGGCCTGGAGTCCTCACTGCACTGATGGGAGTCA
                        || |  ||||   || ||    |||| |||   | || |||| |||   |     ||     ||||  |  || ||||   |   | |      |||||||||||||| | ||||||||||||||| || ||||| ||||| ||| |||| || || ||||| || ||||| |||||  | |||||  | |||||||| |
------------------------gtaagaaccc---tatcacttttttccaatataataactttatactaccattcataa-----ttaatggtaaatataaaggaagttttaacatttaacagGAAATGAAAGGGCAAGGAGTGACAGATGATAGGCTACAATTACTTAGGGAAGTTACTGGTGCCTTTAGGCCAGGAGTTTTGACTGCTTTAATGGGAGTTA

upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G21540.2 (Glycine max), 3'ss of exon 16
gtaagaatcccttcctttgttggtgttactacccacataacatggatttcaaatggagaattttagactgtgaaggccaactaacttaaccgccaacataa--ctaaccctgttgatcataacagGAAATGAAGGAGCAAGGAGTGACAGAGGACAGGCTCCAATTGCTTCGGGATGTAACGGGTGCATTCAGGCCTGGAGTCCTCACTGCACTGATGGGAGTCA
                 |   | |   | |||     ||  ||  |||||| |        | || |   | ||       | || || |  | ||   |   ||||| |||   |   | |||||||||||  || |||||||||||||| || ||||| ||| ||||| |||  |||||  |  | || |||||||||||||| |||||||| |||||||| |
----------------gtaaggatccaattacttgtttagtata-atttcataa-------tctacatcattaacaatccatgacatacctacaaaggaagttctaactctgacaactttcacagGAAATGAGAGATCAAGGAGTGACAGAAGATAGGCTACAACTGCTTAGGGGAGTAACTAGCTCCTTTAGGCCTGGAGTCCTAACTGCACTAATGGGAGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgaaggccaactaacttaaccgccaacataactaaccctgttgatcataacagGAAATGAAGGAGCAAGGAGTGACAGAGGACAGGCTCCAATTGCTTCGGGATGTAACGGGTGCATTCAGGCCTGGAGTCCTCACTGCACTGATGGGAGTCA
             taacttaa  TA-rich tract