1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtatttgcttgcactttgctttgacaaacttataattacataatccatttatgtcttctctgccttgctgattttattttcaacatccaaccattagATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCGAAGGACAATGATGTCAAGATGGCTGATGCAGAG
species | Vitis vinifera |
transcript | Vv09s0002g02500.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAA ATTTTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCGEST: gi|33404879|gb|CF210506.1|CF210506
genomic: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAAgtatttgctt ... caaccattagATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCG
EST: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAA ATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCGEST: gi|110422111|gb|EC988423.1|EC988423
genomic: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAAgtatttgctt ... caaccattagATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCG
EST: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAA ATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCGEST: gi|33405442|gb|CF211069.1|CF211069
genomic: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAAgtatttgctt ... caaccattagATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCG
EST: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAA ATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCGEST: gi|110701778|gb|EE079734.1|EE079734
genomic: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAAgtatttgctt ... caaccattagATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCG
EST: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAA ATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCGEST: gi|22009589|gb|BQ794623.1|BQ794623
genomic: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAAgtatttgctt ... caaccattagATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCG
EST: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAA ATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCGEST: gi|22012121|gb|BQ797155.1|BQ797155
genomic: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAAgtatttgctt ... caaccattagATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCG
EST: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAA ATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCGEST: gi|110428084|gb|EC994545.1|EC994545
genomic: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAAgtatttgctt ... caaccattagATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCG
EST: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAA ATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCGEST: gi|22009862|gb|BQ794896.1|BQ794896
genomic: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAAgtatttgctt ... caaccattagATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCG
EST: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAA ATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCGEST: gi|83275368|gb|DV939376.1|DV939376
genomic: ATGATCTCTGTTCGGATGATCTTCGCAAAAAATTGGAAGCCCCTCGACAAgtatttgctt ... caaccattagATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCG
EST: AAAAA-TGGAAG-CCCTCGACAA A-TCTAAGGGA-GAGGAAGGT-AAAAGCTTGG-TTGAAGAACTCTGCTTCG
genomic: AAAAATTGGAAGCCCCTCGACAAgtatttgctt ... caaccattagATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCG
atccatttatgtcttctctgccttgctgattttattttcaacatccaaccattagATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCGAAGGACAATGATGTCAAGATGGCTGATGCAGAG
tgctgat putative branch site (score: 3)
attttattttcaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgcttgcactttgctttgacaaacttataattacataatccatttatgtcttctctgccttgctgattttattttcaacatccaaccattagATTCTAAGGGATGAGGAAGGTAAAAAGCTTGGTTTGAAGAACTCTGCTTCGAAGGACAATGATGTCAAGATGGCTGATGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT