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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcttttcttgttctcttgctttctctctattcaaaccacaaatttttaaaatcgtcttttaagcaatattttcccccatttctcatatcctttttctattctggggaatccgtgacagGAGCCGATAGCCCAGGAGTTGATGCAAATGGAAATTCTTTTGATTTCACTACAAAGTTGCTACATCTAGCATGGCACCCAAGTGAAAACTCAATCGCCTG

Basic information

species Vitis vinifera
transcript Vv09s0002g02470.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: LOC_Os06g36770.2 (Oryza sativa), 3'ss of exon 13
gtgagtcttttcttgttctcttgctttctctctattcaaaccacaaatttttaaaatcgtcttttaagcaatattttcccccatttctcatatcctttttctattctggggaatccgtgacagGAGCCGATAGCCCAGGAGTTGATGCAAATGGAAATTCTTTTGATTTCACTACAAAGTTGCTACATCTAGCATGGCACCCAAGTGAAAACTCAATCGCCTG
                     || |   | ||| |||| | ||  |||||| |  |  |   |  |    |||||  |   ||  |     | || |||||   |      |||  |  | ||| |  || |  | ||| |||||||| ||||||||||| ||||| ||  | ||||||||||| ||||| ||||||||||||| ||| || || ||||| ||
------------------gtatgttacttttct-ttcacatcaagaattttcagtactgagata-atatgatattggcaatcaccttgtccaaccattttcatat------aatatgctatagGTGGGGAAAATCAAGGCGTTGATGCCAATGGAAATTCATTTGACTTTTCGACAAAGTTGCTCCATCTTGCATGGCACCCAACTGAGAATTCTATCGCATG

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 3'ss of exon 13
----gtgagtcttttcttgttc-------tcttgctttctctctattcaaaccacaaatttttaaaatcgtcttttaagcaatattttcccccatttctcat-atcctttttct----attctggggaatccgtgacagGAGCCGATAGCCCAGGAGTTGATGCAAATGGAAATTCTTTTGATTTCACTACAAAGTTGCTACATCTAGCATGGCACCCAAGTGAAAACTCAATCGCCTG
     ||| | ||||||  ||        |  ||  |  | ||| || | ||   | | ||| |    | |   |  |  |  | |   ||  | |||||||  ||| ||||||    |   | |   ||  |  ||||| |  || |  || ||||||||||| |||||||||||||  ||| |  | ||||||||||| ||||| ||||||||||||| ||| || || ||||| ||
gtatatgactattttctctttagacttaatagtgactattttctctttagacttaatagtttcagccacattcatggactaggactggtcc--agttctcattgtcccttttctcatcacattagctcatatgaaacagGTGGAGAAAATCCGGGAGTTGATGCTAATGGAAATTCTTACGATCTTTCAACAAAGTTGCTCCATCTTGCATGGCACCCAACTGAGAATTCCATCGCGTG

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA13G42800.1 (Glycine max), 3'ss of exon 13
gtgagtcttttcttgttctcttgctttctctctattcaaaccacaaatttttaaaatcgtcttttaagcaatattttcccccatttctcatatcctttttctattctggggaatccgtgacagGAGCCGATAGCCCAGGAGTTGATGCAAATGGAAATTCTTTTGATTTCACTACAAAGTTGCTACATCTAGCATGGCACCCAAGTGAAAACTCAATCGCCTG
|| |||  |||||| |||  || |  | | | |  | |  ||| |||| |||    | |  || | |  |  || ||  |     |||||      |||  |||||| |          |||||||| || | ||| ||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||  |||||||||| |||||||| || ||||| || ||
gtcagt--tttctttttcattttccct-tgtttgatgattccataaatatttt---ttggtttgttactataatattgtcaagagtctcaa---tatttgatattcttga---------acagGAGCAGAAACCCCTGGAGTGGATGCTAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCATCCAAGTGAGAATTCAATTGCTTG

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G20830.1 (Glycine max), 3'ss of exon 13
gtgagtcttttcttgttctcttgctttctctctattcaaaccacaaatttttaaaatcgtcttttaagcaatattttcccccatt-tctcatatcctttttctattctggggaatccgtgacagGAGCCGATAGCCCAGGAGTTGATGCAAATGGAAATTCTTTTGATTTCACTACAAAGTTGCTACATCTAGCATGGCACCCAAGTGAAAACTCAATCGCCTG
                      |     |||||||| ||       |||| |    || |  | ||     |  ||       |  | ||| |  |||    ||   |||  | ||    |||||||| || ||| | || ||||| |||||||| ||||||||||||||||| ||||||||||| ||  ||||||||||||||| ||| || ||||| || ||
----------------------gtaagttctctatttaacaactttatttgtgttttcatgatatagcttgttcttcttgtagtaatatcaaagacttgcaatacattggt-attcttgaacagGAGCAGAGAGCGCCGGTGTTGACGCAAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCACCCAACTGAGAATTCAATTGCTTG

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G20830.4 (Glycine max), 3'ss of exon 13
gtgagtcttttcttgttctcttgctttctctctattcaaaccacaaatttttaaaatcgtcttttaagcaatattttcccccatt-tctcatatcctttttctattctggggaatccgtgacagGAGCCGATAGCCCAGGAGTTGATGCAAATGGAAATTCTTTTGATTTCACTACAAAGTTGCTACATCTAGCATGGCACCCAAGTGAAAACTCAATCGCCTG------
                            |||||||| ||       |||| |    || |  | ||     |  ||       |  | ||| |  |||    ||   |||  | ||    |||||||| || ||| | || ||||| |||||||| ||||||||||||||||| ||||||||||| ||  ||||||||||||||| ||| || ||||| || ||      
--------------------------gttctctatttaacaactttatttgtgttttcatgatatagcttgttcttcttgtagtaatatcaaagacttgcaatacattggt-attcttgaacaggagcagAGAGCGCCGGTGTTGACGCAAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCACCCAACTGAGAATTCAATTGCTTGTGCTGC

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA15G02640.1 (Glycine max), 3'ss of exon 13
gtgagtcttttcttgttctcttgctttctctctattcaaaccacaaatttttaaaatcgtcttttaagcaatattttcccccatttctcatatcctttttctattctggggaatccgtgacagGAGCCGATAGCCCAGGAGTTGATGCAAATGGAAATTCTTTTGATTTCACTACAAAGTTGCTACATCTAGCATGGCACCCAAGTGAAAACTCAATCGCCTG
|| |||  |||||| |||  || |  |      |||  | | |  | |   ||||      | || |    | | || |   | |  |   | |   | || ||  | |  | ||    |||||||| ||   ||| ||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||  |||||||||| |||||||| || ||||| || ||
gtcagt--tttctttttcattttcccttgtatgatttgagcaaagattccataaa------tatttattggtttgttactataatgttgtca-caagtctcaatattcgatattcttgaacagGAGCAGAAGCCCCTGGAGTGGATGCTAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCATCCAAGTGAGAATTCAATTGCTTG

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA07G01440.1 (Glycine max), 3'ss of exon 13
gtgagtcttttcttgttctcttgctttctctctattcaaaccacaaatttttaaaatcgtcttttaagcaatattttcccccatttctcatatcctttttctattctggggaatccgtgacagGAGCCGATAGCCCAGGAGTTGATGCAAATGGAAATTCTTTTGATTTCACTACAAAGTTGCTACATCTAGCATGGCACCCAAGTGAAAACTCAATCGCCTG
              ||    |  |  | | || | |    |||  | ||||||  ||       ||   |   | |||    | |      |  |||    |||  |||  ||||    |||||||| || ||  |  | || || |||||||| ||||||||||||||||| ||||||||||| ||  ||||||||||||||| ||| || ||||| || ||
--------------gtaagttctcaatttatcaactttgccca--agtttttatgata------tatatagcttgttcttgtagtatatcaagacttgcaatatattggt-aatcttgaacagGAGCAGAAAGTGCCAGTGTCGACGCAAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCACCCAACTGAGAATTCAATTGCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatattttcccccatttctcatatcctttttctattctggggaatccgtgacagGAGCCGATAGCCCAGGAGTTGATGCAAATGGAAATTCTTTTGATTTCACTACAAAGTTGCTACATCTAGCATGGCACCCAAGTGAAAACTCAATCGCCTG
                           tttttctatt  TA-rich tract