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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaattgttgctttaaaacatcctactggagagacccaagaaattctcttgtagatattaactaatcacattcatcatattgcagTATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCT

Basic information

species Vitis vinifera
transcript Vv09s0002g01560.t01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|46910096|gb|CN545471.1|CN545471
EST:     CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAA                         TATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA
genomic: CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAAgtaagtaatt ... catattgcagTATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA
EST: gi|110688772|gb|EE067708.1|EE067708
EST:     CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAA                         TATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA
genomic: CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAAgtaagtaatt ... catattgcagTATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA
EST: gi|29785322|gb|CB342196.2|CB342196
EST:     CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAA                         TATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA
genomic: CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAAgtaagtaatt ... catattgcagTATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA
EST: gi|71889230|gb|DT038285.1|DT038285
EST:     CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAA                         TATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA
genomic: CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAAgtaagtaatt ... catattgcagTATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA
EST: gi|71882373|gb|DT031428.1|DT031428
EST:     CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAA                         TATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA
genomic: CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAAgtaagtaatt ... catattgcagTATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA
EST: gi|33402674|gb|CF208301.1|CF208301
EST:     CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAA                         TATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA
genomic: CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAAgtaagtaatt ... catattgcagTATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA
EST: gi|30253108|gb|CB970659.1|CB970659
EST:     CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAA                         TATGGCCAGCGGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA
genomic: CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAAgtaagtaatt ... catattgcagTATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA
EST: gi|71887408|gb|DT036463.1|DT036463
EST:     CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAA                         TATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA
genomic: CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAAgtaagtaatt ... catattgcagTATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA
EST: gi|161707060|gb|FC055937.1|FC055937
EST:     CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAA                         TATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA
genomic: CTGCACCAATTCAATCACCACAAACATATTTCCATCCAAATGGACCTCAAgtaagtaatt ... catattgcagTATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagacccaagaaattctcttgtagatattaactaatcacattcatcatattgcagTATGGCCAGCAGATGTTTTTTGGACACCCGAGGCAGGTCTTGTACATGCCAGGCTATCCCCCT
                     tagatattaactaat  TA-rich tract