Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaagtagatggaataatatatttgaacttttattaagtatgccacaatccaggtatgctgtttatccatgattctgtttttaatcactactattccagctgagcagATACTTCTTAGTAGACGCAGAAGGAGAGATGTTGGAGGAGCAGAAAGGAATTATTAGATCTAACTGCATCGATTGTCTTGATCGAACGAACGTAACCCAG

Basic information

species Vitis vinifera
transcript Vv08s0105g00480.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0105g00480.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT3G51830.1 (Arabidopsis thaliana), 3'ss of exon 13
------------------------------------gtaaaaaagtagatggaataat--atatttgaacttttattaagtatgccacaatccaggta-tgctgtt-tatccatgattctgtttttaatcactactattccag-ctgagcagATACTTCTTAGTAGACGCAGAAGGAGAGATGTTGGAGGAGCAGAAAGGAATTATTAGATCTAACTGCATCGATTGTCTTGATCGAACGAACGTAACCCAG
                                     || |||   || ||  ||  |    | |   |  ||  |   || ||    |||  || ||  |||| | |||  |  ||| | |||  |    | |||| ||||| ||||||||||| ||| | ||||||||||| |   | ||  | || |||||||||||| |||| ||||||||||||||||| |||||||| || || || || ||||||
gtaagaattacggttttggttctactcatttcagatctagaaactgagttgatatggttagcagtcagaggttgttc--gtttggtttaatttagctagcgctgctatatagagaattttatttc-acctgcgactaatccaggctgagcagATATTTCCTTGTAGACGCAGACGAGAACATCCTAGAAGAGCAGAAAGGAGTTATCAGATCTAACTGCATCGACTGTCTTGACCGCACAAATGTTACCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtatgctgtttatccatgattctgtttttaatcactactattccagctgagcagATACTTCTTAGTAGACGCAGAAGGAGAGATGTTGGAGGAGCAGAAAGGAATTATTAGATCTAACTGCATCGATTGTCTTGATCGAACGAACGTAACCCAG
                          ttttaat  putative branch site (score: 3)
                   attctgtttttaat  TA-rich tract