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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattcaatctacaatggacctctactacataaccaactttttttctagcatccatatttgctttttctttttctcttaccttttgctttttaaaattgcgatttcatggatataaattgttttttttttaatctccatgttacagTGCTCTTAGATACAATATAAAAGACAAAGAGATAACCATGATTCCTGTCATGGGCTCCCTTGTCAAGTCTGGTATCCGGACCTTTGTTTACAG

Basic information

species Vitis vinifera
transcript Vv08s0040g01040.t01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34545450|gb|CF513682.1|CF513682
EST:     TCTCTCCATGCTAGACTAGTTGGAGTCGCCAACTGGAGTATGTGCAGCGG                         TGCTCTTAGATACAATATAAAAGACAAAGAGATAACCATGATTCCTGTCAT
genomic: TCTCTCCATGCTAGACTAGTTGGAGTCGCCAACTGGAGTATGTGCAGCGGgtaaaattca ... catgttacagTGCTCTTAGATACAATATAAAAGACAAAGAGATAACCATGATTCCTGTCAT
EST: gi|77578243|gb|DV217899.1|DV217899
EST:     TCTCTCCATGCTAGACTAGTTGGAGTCGCCAACTGGAGTATGTGCAGCGG                         TGCTCTTAGATACAATATAAAAGACAAAGAGATAACCATGATTCCTG
genomic: TCTCTCCATGCTAGACTAGTTGGAGTCGCCAACTGGAGTATGTGCAGCGGgtaaaattca ... catgttacagTGCTCTTAGATACAATATAAAAGACAAAGAGATAACCATGATTCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaattgcgatttcatggatataaattgttttttttttaatctccatgttacagTGCTCTTAGATACAATATAAAAGACAAAGAGATAACCATGATTCCTGTCATGGGCTCCCTTGTCAAGTCTGGTATCCGGACCTTTGTTTACAG
                                   ttttaat  putative branch site (score: 3)
                             ttttttttttaatctc  CT-rich tract
          atttcatggatataaa  TA-rich tract