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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagtcttaacatcatgccttgttttacctattaaatgcttcatatagtggcttcttccacattataacatgaatatgtgcaatggtcattggttgtcaacggtccttgtcttactctctgatttcctggttagATTTACACATCTGCCACCAACCTGTATAGTATGGCTCATCAATTTGATCGCACATCACGTGATGCTCCAAAG

Basic information

species Vitis vinifera
transcript Vv08s0040g00320.t01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33406071|gb|CF211698.1|CF211698
EST:     ATGCGTCTTCTCGGAAGTTGAATCACCCAGCTGATTACTATGATTTCCAT                         ATTTACACATCTGCCACCAACCTGTATAGTATGGCTCATCAATTTGATCGC
genomic: ATGCGTCTTCTCGGAAGTTGAATCACCCAGCTGATTACTATGATTTCCATgtaaaagtct ... tcctggttagATTTACACATCTGCCACCAACCTGTATAGTATGGCTCATCAATTTGATCGC
EST: gi|161713404|gb|FC062796.1|FC062796
EST:     ATGCGTCTTCTCGGAAGTTGAATCACCCAGCTGATTACTATGATTTCCAT                         ATTTACACATCTGCCATCAACCTGTATAGTATGGCTCATCAATTTGATCGC
genomic: ATGCGTCTTCTCGGAAGTTGAATCACCCAGCTGATTACTATGATTTCCATgtaaaagtct ... tcctggttagATTTACACATCTGCCACCAACCTGTATAGTATGGCTCATCAATTTGATCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaatggtcattggttgtcaacggtccttgtcttactctctgatttcctggttagATTTACACATCTGCCACCAACCTGTATAGTATGGCTCATCAATTTGATCGCACATCACGTGATGCTCCAAAG
                                   ctctctgatttcct  CT-rich tract