Sequence
atgc intronic sequence ATGC exonic sequence...tatgaaatctgtggtgttgttttgtccagccaccagattggacttttgaagtgtttgttcttggaatgcccttccttacatacatgtattttttcctcagGCAGCAACCTCGTTAAACTCTAATGAGTGTTTCCTTCTGCAATCTGGTTCTTCAATTTTCACTTGGCATGGAAATCAGAGTACCTTTGAGCAGCAGCAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA02G32100.1 (Glycine max), 3'ss of exon 12
-tatgaaatc--tgtggtgttgttttgtccagccaccagattggacttttgaagtgtttgttcttggaatgcccttccttacatacatgtattttttcctcagGCAGCAACCTCGTTAAACTCTAATGAGTGTTTCCTTCTGCAATCTGGTTCTTCAATTTTCACTTGGCATGGAAATCAGAGTACCTTTGAGCAGCAGCAGT
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gtatgtacccatgaaaatattcctttttttttccctctacaagtatgttggtagggcttatattttatttctagcccttcatacttaagttattcttattcagGTGCCATCATCATTGAATTCTACTGAGTGTTTTGTCCTGCAATCTGGCTCTACAATTTTCACTTGGCATGGAAATCAGTGTTCCTTTGAGCAGCAACAGC
upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA10G21350.2 (Glycine max), 3'ss of exon 13
-tatgaaatc-tgtggtgttgttttgtccagccaccagattggacttttgaagtgtttgttcttggaatgcccttccttacatacatgtattttttcctcagGCAGCAACCTCGTTAAACTCTAATGAGTGTTTCCTTCTGCAATCTGGTTCTTCAATTTTCACTTGGCATGGAAATCAGAGTACCTTTGAGCAGCAGCAGT
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gtatgtactcatgaaagtattccttatttttcctctacaa-gtatgttggtagggtttatattttttttctagcccttaatacttatgttattcttattaagGTGCCATCATCATTGAATTCCACTGAGTGTTTTGTCCTGCAATCTGGCTCTACAATTTTCACTTGGCATGGAAATCAGTGTTCCTTTGAGCAGCAACAGC
upper sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT2G41740.1 (Arabidopsis thaliana), 3'ss of exon 14
-----------------------------------------------------------------------------------tatgaaatctgtggtgttgttttgtccagccaccagattggacttt-tgaagtgtttgttcttggaatgcccttccttacatacatgtattt-------tttcctcagGCAGCAACCTCGTTAAACTCTAATGAGTGTTTCCTTCTGCAATCTGGTTCTTCAATTTTCACTTGGCATGGAAATCAGAGTACCTTTGAGCAGCAGCAGT
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gtacgtgaccaccctagcttctttctttctaagtagtaaagtttagttttcttatttgtgaaatattgcaaattgaataaaggtgtgtagt-tattgttaagctttgtattagaagcgacttaggcgatacataatattctatgatttgctattttgactcataattgtgtgtttgcaatacttccattagGTGGCAACATCTTTGAACTCTTATGAGTGCTTCCTTCTGCAATCTGGTACTTCCATGTTCCTTTGGCATGGAAATCAAAGTACGCATGAACAGCTAGAACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161710780|gb|FC059409.1|FC059409EST: GGATATCTGGAACTTCTGTGCATAACAACAAAGTAGTGCAAGTTGATGCG GCAGCAACCTCGTTAAACTCTAATGAGTGTTTCCTTCTGCAATCTGGTTCT
genomic: GGATATCTGGAACTTCTGTGCATAACAACAAAGTAGTGCAAGTTGATGCGgtatgtacca ... ttttcctcagGCAGCAACCTCGTTAAACTCTAATGAGTGTTTCCTTCTGCAATCTGGTTCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaagtgtttgttcttggaatgcccttccttacatacatgtattttttcctcagGCAGCAACCTCGTTAAACTCTAATGAGTGTTTCCTTCTGCAATCTGGTTCTTCAATTTTCACTTGGCATGGAAATCAGAGTACCTTTGAGCAGCAGCAGT
tccttac putative branch site (score: 2)
tgtattttttcctc putative PPT
atacatgtatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatgaaatctgtggtgttgttttgtccagccaccagattggacttttgaagtgtttgttcttggaatgcccttccttacatacatgtattttttcctcagGCAGCAACCTCGTTAAACTCTAATGAGTGTTTCCTTCTGCAATCTGGTTCTTCAATTTTCACTTGGCATGGAAATCAGAGTACCTTTGAGCAGCAGCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - ggtgttg
- - - - - - - - - - - - -ccagcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acataca