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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatctcatgtccattggtctgttggagctaatttccatatcatgttcaagtatgaaagtagagttcattttttcctctcaaactgctgtgtttcatttacatttatacaccaatctttgcagGATATGGACTGGCTCCGGACCTTGGAGCTTCCTCAGGGCCTGAGAGCTTGATTACAGATTTCTCTATTTTCTTGACGCTTTATTTAACCATGTCACACTT

Basic information

species Vitis vinifera
transcript Vv08s0007g08200.t01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110418727|gb|EC984898.1|EC984898
EST:     ATTGCTCTATCCATCTACATGAGTTTGCGCACAATGTCCGGCTTTTGGAG                         GATATGGACTGGCTCCGGACCTTGGAGCTTCCTCAGGGCCTGAGAGCTTGA
genomic: ATTGCTCTATCCATCTACATGAGTTTGCGCACAATGTCCGGCTTTTGGAGgtaatatctc ... atctttgcagGATATGGACTGGCTCCGGACCTTGGAGCTTCCTCAGGGCCTGAGAGCTTGA
EST: gi|46910331|gb|CN545706.1|CN545706
EST:     ATTGCTCTATCCATCTACATGAGTTTGCGCACAATGTCCGGCTTTTGGAG                         GATATGGACTGGCTCCGGACCTTGGAGCTTCCTCAGGGCCTGAGAGCTTGA
genomic: ATTGCTCTATCCATCTACATGAGTTTGCGCACAATGTCCGGCTTTTGGAGgtaatatctc ... atctttgcagGATATGGACTGGCTCCGGACCTTGGAGCTTCCTCAGGGCCTGAGAGCTTGA
EST: gi|110370877|gb|EC934465.1|EC934465
EST:     ATTGCTCTATCCATCTACATGAGTTTGCGCACAATGTCCGGCTTTTGGAG                         GATATGGACTGGCTCCGGACTTTGGAGCTTCCTCAGGGCCTGAGAGCTTGA
genomic: ATTGCTCTATCCATCTACATGAGTTTGCGCACAATGTCCGGCTTTTGGAGgtaatatctc ... atctttgcagGATATGGACTGGCTCCGGACCTTGGAGCTTCCTCAGGGCCTGAGAGCTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttcctctcaaactgctgtgtttcatttacatttatacaccaatctttgcagGATATGGACTGGCTCCGGACCTTGGAGCTTCCTCAGGGCCTGAGAGCTTGATTACAGATTTCTCTATTTTCTTGACGCTTTATTTAACCATGTCACACTT
                                              tctttgc  CT-rich tract
                       tttcatttacatttat  TA-rich tract