Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatctccttgtctacttcatcaatttttatagcaaggcacagagcttggaacatccaattcaacctattagaccatactgtaatcttatatctaccatctttacttatgtgcatgttttttttttttttttaacttttttgttttaatggttgcagCTTCCTACATACAAACGCCCTAGCACTTTGAGAGCAAAGCTTCTATATGCAATCAATTCTAATGCAGGGTTTGAACTTTCTTAGGGATCTCGCTTAATTT

Basic information

species Vitis vinifera
transcript Vv08s0007g04290.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g04290.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA19G37310.2 (Glycine max), 3'ss of exon 15
gtacatctccttgtctacttcatcaatttttatagcaaggcacagagcttggaacatccaattcaacctattagaccatactgtaatcttatatctaccatctttacttatgtgcatgttttttttttttttttaacttttttgttttaatggttgcagCTTCCTACATACAAACGCCCTAGCACTTTGAGAGCAAAGCTTCTATATGCAATCAATTCTAATGCAGGGTTTGAACTTTCTTAGGGATCTCGCTTAATTT
                                                        |   | |||     | |||| | |  ||   | | |       |||| |  | || |    | ||| |||    |||||  ||   | ||| |||| || |||||||| ||||||||||| ||  |||||||||||||||||||||||||||| |||| ||| ||||| || |||||||||||||   |||||   | |    
--------------------------------------------------------tttgagtcact---tgagacaaaatagttgacattttaaggtaatctcttgtcatatttcagatttatttacacttttatgttccatctttcaatgattacagCTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCCATCAGTTCAAATGCCGGATTTGAACTTTCTT---GATCTGCTTCAG---

upper sequence: Vv08s0007g04290.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA03G34650.1 (Glycine max), 3'ss of exon 14
gtacatctccttgtctacttcatcaatttttatagcaaggcacagagcttggaacatccaattcaacctattagaccatactgtaatcttatatctaccatctttacttatgtgcatgttttttttttttttttaacttttttgttttaatggttgcagCTTCCTACATACAAACGCCCTAGCACTTTGAGAGCAAAGCTTCTATATGCAATCAATTCTAATGCAGGGTTTGAACTTTCTTAGGGATCTCGCTTAATTT-
                                                        |   | |||     | |||| | | |||   | | |       |||| |  | ||    |   ||| |||    |||||  ||   |   | | || || |||||||| ||||||||||| ||  |||||||||||||||||||||||||||| |||| ||| ||||| || |||||||||||||   ||||| |||| || | 
--------------------------------------------------------tttgagtcact---tgagacaaaattgttggcattttaaggtaatctattgtcatacttaaaatttatttacacttttattttccatccctcactgattacagCTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCCATCAGTTCAAATGCCGGATTTGAACTTTCTT---GATCT-GCTTCATGTG

upper sequence: Vv08s0007g04290.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA19G37310.4 (Glycine max), 3'ss of exon 15
gtacatctccttgtctacttcatcaatttttatagcaaggcacagagcttggaacatccaattcaacctattagaccatactgtaatcttatatctaccatctttacttatgtgcatgttttttttttttttttaacttttttgttttaatggttgcagCTTCCTACATACAAACGCCCTAGCACTTTGAGAGCAAAGCTTCTATATGCAATCAATTCTAATGCAGGGTTTGAACTTTCTTAGGGATCTCGCTTAATTT
                                                        |   | |||     | |||| | |  ||   | | |       |||| |  | || |    | ||| |||    |||||  ||   | ||| |||| || |||||||| ||||||||||| ||  |||||||||||||||||||||||||||| |||| ||| ||||| || |||||||||||||   |||||   | |  | 
--------------------------------------------------------tttgagtcact---tgagacaaaatagttgacattttaaggtaatctcttgtcatatttcagatttatttacacttttatgttccatctttcaatgattacagCTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCCATCAGTTCAAATGCCGGATTTGAACTTTCTT---GATCTGCTTCAGGTG

upper sequence: Vv08s0007g04290.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA19G37310.1 (Glycine max), 3'ss of exon 15
gtacatctccttgtctacttcatcaatttttatagcaaggcacagagcttggaacatccaattcaacctattagaccatactgtaatcttatatctaccatctttacttatgtgcatgttttttttttttttttaacttttttgttttaatggttgcagCTTCCTACATACAAACGCCCTAGCACTTTGAGAGCAAAGCTTCTATATGCAATCAATTCTAATGCAGGGTTTGAACTTTCTTAGGGATCTCGCTTAATTT---
                                                        |   | |||     | |||| | |  ||   | | |       |||| |  | || |    | ||| |||    |||||  ||   | ||| |||| || |||||||| ||||||||||| ||  |||||||||||||||||||||||||||| |||| ||| ||||| || |||||||||||||   |||||   | |  |    
--------------------------------------------------------tttgagtcact---tgagacaaaatagttgacattttaaggtaatctcttgtcatatttcagatttatttacacttttatgttccatctttcaatgattacagCTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCCATCAGTTCAAATGCCGGATTTGAACTTTCTT---GATCTGCTTCAGGTGGTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110363275|gb|EC926852.1|EC926852
EST:     AGGATGTAGAGCGACTTCCCTCAGCTTCCACATGCTACAACACGCTCAAG                         CTTCCTACATACAAACGCCCTAGCACTTTGAGAGCAAAGCTTCTATATGCA
genomic: AGGATGTAGAGCGACTTCCCTCAGCTTCCACATGCTACAACACGCTCAAGgtacatctcc ... atggttgcagCTTCCTACATACAAACGCCCTAGCACTTTGAGAGCAAAGCTTCTATATGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttatgtgcatgttttttttttttttttaacttttttgttttaatggttgcagCTTCCTACATACAAACGCCCTAGCACTTTGAGAGCAAAGCTTCTATATGCAATCAATTCTAATGCAGGGTTTGAACTTTCTTAGGGATCTCGCTTAATTT
        tgcatgtttttttttt  TA-rich tract