Sequence
atgc intronic sequence ATGC exonic sequence...tgttacttgggttgctgaggttgcgttctatatgaatatttgattctatgttctactgcagcctgggtcttacagcatttatttatgtgcttgctgttagGTAGAATTTACTGGAAACTACAACGAATATTTTGGATATGCTACCGATGTAGATGCCATGGTTTATCTAATGCTCGTTAATGATCTTATTCATGGGCTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03750.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G032628_T01 (Zea mays), 3'ss of exon 13
-------------------------------------------tgttacttgggttgctgaggt-tgcgttcta--tatgaatatttgattctatgttc-tactgcagc-ctgggtcttacagcatttatttatgtgcttgctgttagGTAGAATTTACTGGAAACTACAACGAATATTTTGGATATGCTACCGATGTAGATGCCATGGTTTATCTAATGCTCGTTAATGATCTTATTCATGGGCTCT
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gtaatttaagctttatgcctgttagtttatcttcacttgctaagtctgactggaatactggattatgcctgggaactagttttgtttagtatcatatttgttatatatcattccttcttctaatctaaagtcatgcattttactttagGTAACATTTACGGGGAACTTCAATGAGTATTTTGGCTTTGCCACCGATGTAGATGCAGTGGTTTACTTGATGCTGGTAAATGATCTAATTCATGGACTTT
upper sequence: Vv08s0007g03750.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT2G36390.1 (Arabidopsis thaliana), 3'ss of exon 13
----tgttact-tgggttgctgaggttgcgttctatatgaatatttgattctatgtt---------ctactgcagcctg--ggtcttacagcatttatttatgtgc-ttgctgttagGTAGAATTTACTGGAAACTACAACGAATATTTTGGATATGCTACCGATGTAGATGCCATGGTTTATCTAATGCTCGTTAATGATCTTATTCATGGGCTCT
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gtggtatttttgtatggaattagttttgttctttatgtcactatttgatagtatcctacaaatatgcaaatgcaaaaagatggctttatggaacctaactgctagcgtttgtggcagGTCGAATTTACTGGGAATTACAATGAGTACTTTGGATATTCTACTGATGTTGACGCTGTGGTCTATCTAATGCTGGTGAACGATTTGATTCATGGGCTAT
upper sequence: Vv08s0007g03750.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT5G03650.1 (Arabidopsis thaliana), 3'ss of exon 13
-------------tgttact-tgggttgctgagg------ttgcgttctatatgaatatttgattctatgt-----tctactgcagcctgggtc---ttacag--catttatttatgtgcttgctgttagGTAGAATTTACTGGAAACTACAACGAATATTTTGGATATGCTACCGATGTAGATGCCATGGTTTATCTAATGCTCGTTAATGATCTTATTCATGGGCTCT
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gtacttcaaacttttctacaatggatggctaatgcaatctttatgtttttcccatctttccaatgttgtatcagctttaagtatatcttaggtcggtctgctgaccttctattttgtgggttttggatagGTTGGATTTACTGGGAACTACACCGAATACTTTGGATTGGAAACTGATGTGGATGCTGTGAATTATCTCATGCTGGTTAATGATATGATTCATGGGCTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctatgttctactgcagcctgggtcttacagcatttatttatgtgcttgctgttagGTAGAATTTACTGGAAACTACAACGAATATTTTGGATATGCTACCGATGTAGATGCCATGGTTTATCTAATGCTCGTTAATGATCTTATTCATGGGCTCT
gtcttac putative branch site (score: 3)
atttatttatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgttacttgggttgctgaggttgcgttctatatgaatatttgattctatgttctactgcagcctgggtcttacagcatttatttatgtgcttgctgttagGTAGAATTTACTGGAAACTACAACGAATATTTTGGATATGCTACCGATGTAGATGCCATGGTTTATCTAATGCTCGTTAATGATCTTATTCATGGGCTCT
- -tacttgg
- - - - - -ttgctga
- - - - - - - - - - -tgcgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtgc