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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgccatcattctagtgtggatggaattattgttggaacttcagctaaaccggtttcattcttttaaagctatgggtttaaaattaaaaccaatctcattgttttcttttgtcttatatcattggtttccttgagcttgctttcatttgttattcttttgtaatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACACACCAAGACAACTGGCCGCAGGGGAAAGACTGTTGGTGTCTCCAAGAAG

Basic information

species Vitis vinifera
transcript Vv07s0151g00870.t01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110396954|gb|EC962662.1|EC962662
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|34550966|gb|CF519172.1|CF519172
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110420736|gb|EC987016.1|EC987016
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110422753|gb|EC989083.1|EC989083
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|30303911|gb|CB980705.1|CB980705
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGT
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGT
EST: gi|110695917|gb|EE074478.1|EE074478
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110401398|gb|EC968008.1|EC968008
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|71867265|gb|DT016320.1|DT016320
EST:     GGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110405111|gb|EC970644.1|EC970644
EST:     GGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110716948|gb|EE092386.1|EE092386
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|34550098|gb|CF518316.1|CF518316
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110427747|gb|EC994197.1|EC994197
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110418336|gb|EC984483.1|EC984483
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|34415060|gb|CF413814.1|CF413814
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110703206|gb|EE079847.1|EE079847
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110706176|gb|EE083859.1|EE083859
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|28968828|gb|CB347861.1|CB347861
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110715187|gb|EE092948.1|EE092948
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110429102|gb|EC995590.1|EC995590
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110686957|gb|EE063949.1|EE063949
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110686398|gb|EE063990.1|EE063990
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110717903|gb|EE094167.1|EE094167
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110725291|gb|EE101628.1|EE101628
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110426519|gb|EC992932.1|EC992932
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|32460775|gb|CD801949.1|CD801949
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110369999|gb|EC934173.1|EC934173
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110706212|gb|EE081539.1|EE081539
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110388504|gb|EC953262.1|EC953262
EST:     CGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: CGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110701480|gb|EE079100.1|EE079100
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|30134618|gb|CB919956.1|CB919956
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGAGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|87586595|gb|DY474808.1|DY474808
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110380839|gb|EC946135.1|EC946135
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110424269|gb|EC990625.1|EC990625
EST:     CTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: CTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|30129040|gb|CB914379.1|CB914379
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110688898|gb|EE067978.1|EE067978
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110376910|gb|EC941983.1|EC941983
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110724006|gb|EE099466.1|EE099466
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110400716|gb|EC967291.1|EC967291
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110409350|gb|EC975011.1|EC975011
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110699921|gb|EE077373.1|EE077373
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110697220|gb|EE074017.1|EE074017
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110687995|gb|EE066043.1|EE066043
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110429849|gb|EC996360.1|EC996360
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
EST: gi|110417860|gb|EC983956.1|EC983956
EST:     GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAG                         GAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA
genomic: GCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGgtttgccatc ... taatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatcattggtttccttgagcttgctttcatttgttattcttttgtaatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACACACCAAGACAACTGGCCGCAGGGGAAAGACTGTTGGTGTCTCCAAGAAG
                                     ttcttttgt  CT-rich tract
                             atttgttattctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgccatcattctagtgtggatggaattattgttggaacttcagctaaaccggtttcattcttttaaagctatgggtttaaaattaaaaccaatctcattgttttcttttgtcttatatcattggtttccttgagcttgctttcatttgttattcttttgtaatcggcagGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACACACCAAGACAACTGGCCGCAGGGGAAAGACTGTTGGTGTCTCCAAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG