Sequence
atgc intronic sequence ATGC exonic sequence...tatttcatattttctgtccatgcatattttccttccatattggaaataaatgatgtgataaaatcatctacattcccatcatgctcgaaattctgtgtagATATATAAAAACTTCATTCTAGCAAATGAATACCAATCGTCGAAGCTGTGTGAGGCATTGTATACTAGATGCGAGGACAAAATGGACCAGCTTCAAGTCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 3'ss of exon 14
tatttcatattttctgtccat-gcatattttccttccatattggaaataaatgatgtgataaaatcatctacattcccat-catgctcgaaattctgtgtagATATATAAAAACTTCATTCTAGCAAATGAATACCAATCGTCGAAGCTGTGTGAGGCATTGTATACTAGATGCGAGGACAAAATGGACCAGCTTCAAGTCC
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-aacctttatgtaccatttgttatatgtcttgtgatcgactttcacttctatc-tcttatagaagataatatatttacatacttacagggtataccttgtagGTGTACAGAAACTTCCTTCTAGCAAATGAGTATCAATCATCAAAGCTGTGTGAAGCACGCTTCTCAGAATGTGAAGATAAAATGGACCACCTTCAAGTCT
upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G019361_T03 (Zea mays), 3'ss of exon 13
tatttcatattttctgtc-catgcatattttccttccatattggaaataaatgatgtgataaaatcatctacattcccatcatgctcgaaattctgtgtagATATATAAAAACTTCATTCTAGCAAATGAATACCAATCGTCGAAGCTGTGTGAGGCATTGTATACTAGATGCGAGGACAAAATGGACCAGCTTCAAGTCC--------
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-attgaaactctgtcatctcttacatgccttcaactcaacttatacctgtagaagataataagttt---tacatacttacag-----gatgtactttgtaggtgtacagAAACTTACTTCTAGCTAATGAATATCAATCGTCAAAGCTGTGTGAAGCTCGCTTTTCTGAGTGTGAAGATAAGATGGATCACCTTCAAGTCTTGAAACTT
upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G019361_T02 (Zea mays), 3'ss of exon 13
--tatttcat--attttctgtccatgcatattttccttccatattggaaataaatg-atgtgataaaatcatctacattcccatcatgctcgaaattctgtgtagATATATAAAAACTTCATTCTAGCAAATGAATACCAATCGTCGAAGCTGTGTGAGGCATTGTATACTAGATGCGAGGACAAAATGGACCAGCTTCAAGTCC
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ggaacgccattgaaactctgtcatctcttacatgccttcaactcaacttatacctgtagaagataataagttttacatacttacag-----gatgtactttgtagGTGTACAGAAACTTACTTCTAGCTAATGAATATCAATCGTCAAAGCTGTGTGAAGCTCGCTTTTCTGAGTGTGAAGATAAGATGGATCACCTTCAAGTCT
upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G321413_T01 (Zea mays), 3'ss of exon 7
----tatttcatattttctgtccatgcatattttccttccatattggaaataaatg-atgtgataaaatcatctacattcccatcatgctcgaaattctgtgtagATATATAAAAACTTCATTCTAGCAAATGAATACCAATCGTCGAAGCTGTGTGAGGCATTGTATACTAGATGCGAGGACAAAATGGACCAGCTTCAAGTCC
| | | | | |||| | || | ||||| | ||| || | ||||| | | ||||| | | || | || ||||| | || | |||||| ||||||| |||||||| |||||||| ||||||||||| || | | || || || || || ||||| || |||||||||
aacgccactgaaactctgtgtcatctcttacatgccttcaactcaacttatacctgtagaagataataagttttacatacttacag-----gatgtactttgtagGTGTACAGAAACTTACTTCTAGCTAATGAATATCAATCGTCAAAGCTGTGTGAAGCTCGCTTTTCTGAGTGTGAAGATAAGATGGATCACCTTCAAGTCT
upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA10G03660.1 (Glycine max), 3'ss of exon 15
tatttcatattttctgtccatgcatattttccttccatattggaaataaatgatgtgataaaatcatctacattcccatcatgctcga-aattctgtgtagATATATAAAAACTTCATTCTAGCAAATGAATACCAATCGTCGAAGCTGTGTGAGGCATTGTATACTAGATGCGAGGACAAAATGGACCAGCTTCAAGTCC
||||| | ||| | | || || |||| | | || ||| || ||||| | | | | | || | || | || || | ||||| || | || | ||| || || ||||| || | ||| |||||||| |||| || ||||| |||||||||||||| ||||||||||| |
tatttgttgatttggtgatctttggacctttgctctgctttggtcctggaatttg-aatatgatgatctatacttcaaatttactggggaaaattatgcagGTGTATAAGAATGTTGTTTTGCAAAACGAGTATCAATCTTCAAGGCTCTGTGAGGCGCTGTACACCAGATGTGAGGACAAAATGGATCAGCTTCAAGTTC
upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT2G38840.1 (Arabidopsis thaliana), 3'ss of exon 14
-----------------------------------------------------------------tatttcatattttctgtccatgcatattttccttccatattggaaataaatgatgtgataaaatcatctacattcccatcat-----gctcgaaattctgtgtagATATATAAAAACTTCATTCTAGCAAATGAATACCAATCGTCGAAGCTGTGTGAGGCATTGTATACTAGATGCGAGGACAAAATGGACCAGCTTCAAGTCC
||| |||| ||| || || || | ||||| | | ||| | ||||| | | | | ||| | || ||||| ||| || ||||||| || || |||| |||||||||||||||||||||||||| |||||||| | ||||| || || || || | |||||||| | || | |
gtatgaattcctatgctaatatagaatttctattaagtgtggcttagtggatgaaacaaagggatgattctgaatttcgtgttggcaaat-ttggtagtctac---ggaaaaataagatttc-caaaattactttcttattcattcttgtgcacttgaaatattgtccagGTATATAAGAATTTTGTTCTTGCAAATGAATACCAATCGTCGAAGCTCTGTGAGGCGCTATATACAAGTTGTGAAGATGACATGGACCACTTACAGGCTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataaatgatgtgataaaatcatctacattcccatcatgctcgaaattctgtgtagATATATAAAAACTTCATTCTAGCAAATGAATACCAATCGTCGAAGCTGTGTGAGGCATTGTATACTAGATGCGAGGACAAAATGGACCAGCTTCAAGTCC
ataaaatcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatttcatattttctgtccatgcatattttccttccatattggaaataaatgatgtgataaaatcatctacattcccatcatgctcgaaattctgtgtagATATATAAAAACTTCATTCTAGCAAATGAATACCAATCGTCGAAGCTGTGTGAGGCATTGTATACTAGATGCGAGGACAAAATGGACCAGCTTCAAGTCC
- - - - - - - - -ccatgca
- - - - - - - - - - - - - - - ccttcca
- - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatca