Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccacatgctttcaactgcatctctgctgctcctttagtaattttatttgatcagtaattaatagattgctgacaaatttcaggaatcacaacacgttctctgataagtttacatcttgcagGAAAGGCTTGAGAGAGAATACAACTTGACCTTAATAACTACTGCTCCAAGTGTTGTATACAGAGTGAACTGTATAAATGGTGATACT

Basic information

species Vitis vinifera
transcript Vv07s0031g03050.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: LOC_Os02g06300.1 (Oryza sativa), 3'ss of exon 13
gtccacatgctttcaactgcatctctgctgctcctttagta-attttatttgatcagtaattaatagattgctgacaaatttcaggaatcacaacacgttctctgataagtttacatcttgcagGAAAGGCTTGAGAGAGAATACAACTTGACCTTAATAACTACTGCTCCAAGTGTTGTATACAGAGTGAACTGTATAAATGGTGATACT
                             | || | || |  | || | |   ||| || |  ||    |  | |||  | |   || |   ||      |      | |||  | |  | ||||||||||| |||||||| || ||||||| |||||||| |||||| || ||||| || |||   || |||       |||| || |||
-----------------------------gttcttataatctacttcactc--tcactagtccatctcatatt-acagctatggtgacttgaaatttcgacaacataatgttctctttgttcagGAAAGGCTCGAGAGAGAGTATAACTTGAACTTAATAATTACTGCACCCAGTGTAGTTTACCATGTCAACCTAGCCGATGGCGAAACT

upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G003157_T02 (Zea mays), 3'ss of exon 4
gtccacatgctttcaactgcatctctgctgctcctttagtaattttatttgat--cagtaattaatagattgctgacaaatttcaggaatcacaacacgttctctgataagtttacatcttgcagGAAAGGCTTGAGAGAGAATACAACTTGACCTTAATAACTACTGCTCCAAGTGTTGTATACAGAGTGAACTGTATAAATGGTGATACT
                             | || |  | |    ||  || ||  |||||  | |||        || |      |  ||  | |||   |  ||      ||| |   || ||||||||||||||||| ||||||||||||| |||||||| |||||| ||||| || |||||| | |||||||||    ||||||| |||
-----------------------------gttcttacaatctacttggttcatggcagtagctcataataaaaccactatggcttgacatttctacaacatagctt-----ttttctattttcagGAAAGGCTTGAGAGGGAATACAACTTGAACTTAATAATTACTGCACCAAGCGTGGTATACCGTGTGAACTGTGCTGATGGTGAAACT

upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA06G16700.1 (Glycine max), 3'ss of exon 13
--------------gtccacatgct-ttcaactgcatctctgctgctcctttagtaattttatttgatcagtaattaatagat-tgctgacaaatttcaggaatcacaacacgttctctgataagtt-tacatcttgcagGAAAGGCTTGAGAGAGAATACAACTTGACCTTAATAACTACTGCTCCAAGTGTTGTATACAGAGTGAACTGTATAAATGGTGATACT
              |  ||  | || ||  |||  |     |    | ||| | |  | |||| |    || |  |||| ||  | ||||  || ||  | || |    |   || ||| | ||||| |  |  ||  |||| |||||||||||||||||||| |||| | ||||||| ||||||||||||||||| ||||||||  ||||| ||||||||||||||
gttcgaatttgttggagcatctactctttgactttaata--ggaaatgcttgaatgttcttatatatatagca--taattgacattctgattaactttggaaacctggtc---ttatcttacaagttctttacattatagGAGAGGCTTGAGAGAGAATACAATTTGAGCCTAATAACAACTGCTCCAAGTGTTGTGTACAGAGTACACTGTGTAAATGGTGATACT

upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA04G38360.1 (Glycine max), 3'ss of exon 13
gtccacatgctttcaactgcat-ctctgctgctcctttagtaatt---------ttatttgatcagtaattaatagattgctgacaaatttcaggaatcacaacacgttctctgataagtt-tacatcttgcagGAAAGGCTTGAGAGAGAATACAACTTGACCTTAATAACTACTGCTCCAAGTGTTGTATACAGAGTGAACTGTATAAATGGTGATACT
|| |  ||   ||  |     | ||||   |||    ||| ||||         || ||  ||  |  || | |    | ||||  || ||  | || |    |   || ||| | ||||| |  |  || ||||| || ||||||||||||||||| |||| | | ||||| |||||||||||||| || ||||| ||  ||||| ||||||||||||||
gttcgaatatgttggagcatctactctttggctttcataggaattgcttgaatgttcttatatatggcataattgacattctgattaactttggaaacctggtc---ttatcttacaagttctttacattacagGAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGTGTCGTGTACAGGGTACACTGTGTAAATGGTGATACT

upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA04G33480.1 (Glycine max), 3'ss of exon 7
gtccacatgctttcaactgcat-ctctgctgctcctttagtaatt---------ttatttgatcagtaattaatagattgctgacaaatttcaggaatcacaacacgttctctgataagtttacatcttgcagGAAAGGCTTGAGAGAGAATACAACTTGACCTTAATAACTACTGCTCCAAGTGTTGTATACAGAGTGAACTGTATAAATGGTGATACT
|| |  ||   ||  |     | ||||   |||    ||| ||||         || ||  ||  |  || | |    | ||||  || ||  | || |    |   |  |   |    |||||||  | ||||| || ||||||||||||||||| |||| | | ||||| |||||||||||||| || ||||| ||  ||||| ||||||||||||||
gttcgaatatgttggagcatctactctttggctttcataggaattgcttgaatgttcttatatatggcataattgacattctgattaactttggaaacctggtcttatcttaccagttctttacat--tacagGAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGTGTCGTGTACAGGGTACACTGTGTAAATGGTGATACT

upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT5G08650.1 (Arabidopsis thaliana), 3'ss of exon 13
gtccacatgctttcaactgcatctctgctgctcctttagtaattttatttgatcagtaattaatagattgctgacaaatttcaggaatcacaacacgttctctgataagtttacatcttgcagGAAAGGCTTGAGAGAGAATACAACTTGACCTTAATAACTACTGCTCCAAGTGTTGTATACAGAGTGAACTGTATAAATGGTGATACT
                     |  | | | |  |     ||  |       || | | ||    |      |||   || |||    |     |     |||   |    |    | |  ||||||||||| ||||| || |||||||| |   | || || || |||||||||||||| || || ||||||| | ||||||||||||||
---------------------ttacagtttcctccccgatagatacccgccataaattatactcaacaaagtgaattatatcattctttgtt-cttacgctccagttcactcttct-tcacagGAAAGGCTAGAGAGGGAGTACAACTTAAATCTTATTACCACAGCTCCAAGTGTTGTTTATAGGGTGAACTCTGTAAATGGTGATACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgacaaatttcaggaatcacaacacgttctctgataagtttacatcttgcagGAAAGGCTTGAGAGAGAATACAACTTGACCTTAATAACTACTGCTCCAAGTGTTGTATACAGAGTGAACTGTATAAATGGTGATACT
                                    ataagttta  TA-rich tract