1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...cactggtcattccaggatatagatagtggcactatataattaatttgatcaaatccccagactggtgaactaatgaggtgaatcttttttgcactggcagGGTTGGGGTGCTATTTCTTTGCAGCTACATTACACTTCCACTGTATGCCCTTATAACTCAG
species | Vitis vinifera |
transcript | Vv07s0031g02240.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TCTTGCTTCCATAATAATTTCAAGCTTGTTATCATAAAGATTGCTTTAGG GGGTTGGGGTGCTATTTCTTTGCAGCTACATTACACTTCCACTGTATEST: gi|122689026|gb|EC930382.1|EC930382
genomic: TCTTGCTTCCATAATAATTTCAAGCTTGTTATCATAAAGATTGCTTTAGGgtaagtcttt ... gcactggcagGG-TTGGGGTGCTATTTCTTTGCAGCTACATTACACTTCCACTGTAT
EST: TCTTGCTTCCATAATAATTTCAAGCTTGTTATCATAAAGATTGCTTTAGG GGTTGGGGTGCTATTTCTTTGCAGCTACATTACACTTCCACTGTATGCCCT
genomic: TCTTGCTTCCATAATAATTTCAAGCTTGTTATCATAAAGATTGCTTTAGGgtaagtcttt ... gcactggcagGGTTGGGGTGCTATTTCTTTGCAGCTACATTACACTTCCACTGTATGCCCT
tgatcaaatccccagactggtgaactaatgaggtgaatcttttttgcactggcagGGTTGGGGTGCTATTTCTTTGCAGCTACATTACACTTCCACTGTATGCCCTTATAACTCAG
aactaat putative branch site (score: 2)
tcttttttgc putative PPT
aatctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactggtcattccaggatatagatagtggcactatataattaatttgatcaaatccccagactggtgaactaatgaggtgaatcttttttgcactggcagGGTTGGGGTGCTATTTCTTTGCAGCTACATTACACTTCCACTGTATGCCCTTATAACTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - tcattcc
- - - - - - - - - - - - - -ggcacta
- - - - - - - - - - - - - - - - - - - - - - - - - - atcccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctggtga