Sequence
atgc intronic sequence ATGC exonic sequence...ctgtaacttttgtaagctggagtcttccttttagtttaatgggttttttttttttgtgtgcgctttttgttttttctgtttttccctacctatgcttcagGTTGGAGAGTTCTTTCCGAAATTTCTCTAGGCCGGTACTTCATTCAGCAGCACGAGTTGTGCAAGAGATGGGGAAAAGTCGGGCTGCAGCATTTGCCTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA05G36530.1 (Glycine max), 3'ss of exon 12
----------------ctgtaactt---ttgtaagctggagtcttccttttagtttaatgggttttttttttttgtg-----tgcgctttttgtttttt-------ctgtttttccctacctatgcttcagGTTGGAGAGTTCTTTCCGAAATTTCTCTAGGCCGGTACTTCATTCAGCAGCACGAGTTGTGCAAGAGATGGGGAAAAGTCGGGCTGCAGCATTTGCCTTA
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gttcaaaaactcatttgtgtatttctgcttgcatgtctattttgtcttgttgaattatcaagtcattgactcgtgtgaagtataaactttctaatcataatgcacattgtctattatttactgctcttcagGTTAGAGAGTTCTTTCCGTAGCTTTTCTAGACCTGTGCTTCATGCAGCAGCTAGAGTTGTACAGGAGATGGGGAAAAGTCGGGCTGCTGCCTTTGCTTTG
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G03020.1 (Glycine max), 3'ss of exon 12
----------------ctgtaactt---ttgtaagctggagtcttccttttagtttaatgggttttttttttttgtgt-gcgctttttgttttttc-----------tgtttttccctacctatgcttcagGTTGGAGAGTTCTTTCCGAAATTTCTCTAGGCCGGTACTTCATTCAGCAGCACGAGTTGTGCAAGAGATGGGGAAAAGTCGGGCTGCAGCATTTGCCTTA
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gttcaaaaactcatttgtgtatttctgcttgcatgtctattttgtcttgttgaattattaagtcattgactcgggtgaagtataaattgtctaatcataatgcacattgtctattatttactgctcttcagGTTAGAGAGTTCTTTCCGTAGCTTTTCTAGACCTGTGCTTCATGCAGCAGCTAGAGTTGTACAGGAGATGGGGAAAAGTCGGGCTGCTGCCTTTGCTTTG
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT2G07360.2 (Arabidopsis thaliana), 3'ss of exon 13
-----------------------------------------------ctgtaacttttgtaagctggagtcttccttttagtt-taatgggttttttttttttgtgtgcgctttttgttttttctgtttttccctacctatgcttcagGTTGGAGAGTTCTTTCCGAAATTTCTCTAGGCCGGTACTTCATTCAGCAGCACGAGTTGTGCAAGAGATGGGGAAAAGTCGGGCTGCAGCATTTGCCTTA
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gtactcctagcttggtggaagactgtgtttagaattgcagatcttatggattccctttcctcactagaatgttgctttggattgtaatgatcgttatggttgtgtttcttgttaaagaactttc-gcaaattgatcctgttctttcagGTTAGAGAGCTCATTTCGCAGTTTCTCAAGACCAGTACTTCATGCAGCAGCAAGGGTTGTGCAAGAGATGGGAAAGAGTAGAGCAGCAGCGTTTGCTATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttttttttgtgtgcgctttttgttttttctgtttttccctacctatgcttcagGTTGGAGAGTTCTTTCCGAAATTTCTCTAGGCCGGTACTTCATTCAGCAGCACGAGTTGTGCAAGAGATGGGGAAAAGTCGGGCTGCAGCATTTGCCTTA
ctttttgttttttctg CT-rich tract
tttttgttttttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctgtaacttttgtaagctggagtcttccttttagtttaatgggttttttttttttgtgtgcgctttttgttttttctgtttttccctacctatgcttcagGTTGGAGAGTTCTTTCCGAAATTTCTCTAGGCCGGTACTTCATTCAGCAGCACGAGTTGTGCAAGAGATGGGGAAAAGTCGGGCTGCAGCATTTGCCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG