1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ggacttattttatttgtgtcctctgtacaaattttgcaagaaataactacaactcattaatctttaagtagtaattattgttgtttggaatgtctttcagGCACCGTTTATAAACAGGTATTATGGGAAAGCTCATGAAGTTCTGTGATTGGGCTCATCAACCACCAGTATTTCTACTGCAAGAGATGCCAAGTGGTTTG
species | Vitis vinifera |
transcript | Vv07s0031g01480.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGTTCTACCCTGTGCAGACCGAGGATACTCCTGACATATCAAATGTTAAG GCACCGTTTATAAACAGGTATTATGGGAAAGCTCATGAAGTTCTGTGATTGEST: gi|30256234|gb|CB972077.1|CB972077
genomic: AGTTCTACCCTGTGCAGACCGAGGATACTCCTGACATATCAAATGTTAAGgtacaatttt ... tgtctttcagGCACCGTTTATAAACAGGTATTATGGGAAAGCTCATGAAGTTCTGTGATTG
EST: AGTTCTACCCTGTGCAGACCGAGGATACTCCTGACATATCAAATGTTAAG GCACCGTTTATAAACAGGTATTATGGGAAAGCTCATGAAGTTCTGTGATTGEST: gi|22013340|gb|BQ798374.1|BQ798374
genomic: AGTTCTACCCTGTGCAGACCGAGGATACTCCTGACATATCAAATGTTAAGgtacaatttt ... tgtctttcagGCACCGTTTATAAACAGGTATTATGGGAAAGCTCATGAAGTTCTGTGATTG
EST: AGTTCTACCCTGTGCAGACCGAGGATACTCCTGACATATCAAATGTTAAG GCACCGTTTATAAACAGGTATTATGGGAAAGCTCATGAAGTTCTGTGATTGEST: gi|22014631|gb|BQ799665.1|BQ799665
genomic: AGTTCTACCCTGTGCAGACCGAGGATACTCCTGACATATCAAATGTTAAGgtacaatttt ... tgtctttcagGCACCGTTTATAAACAGGTATTATGGGAAAGCTCATGAAGTTCTGTGATTG
EST: AGTTCTACCCTGTGCAGACCGAGGATACTCCTGACATATCAAATGTTAAG GCACCGTTTATAAACAGGTATTATGGGAAAGCTCATGAAGTTCTGTGATTGEST: gi|22013302|gb|BQ798336.1|BQ798336
genomic: AGTTCTACCCTGTGCAGACCGAGGATACTCCTGACATATCAAATGTTAAGgtacaatttt ... tgtctttcagGCACCGTTTATAAACAGGTATTATGGGAAAGCTCATGAAGTTCTGTGATTG
EST: AGTTCTACCCTGTGCAGACCGAGGATACTCCTGACATATCAAATGTTAAG GCACCGTTTATAAACAGGTATTATGGGAAAGCTCATGAAGTTCTGTGATTGEST: gi|37188989|gb|CF608338.1|CF608338
genomic: AGTTCTACCCTGTGCAGACCGAGGATACTCCTGACATATCAAATGTTAAGgtacaatttt ... tgtctttcagGCACCGTTTATAAACAGGTATTATGGGAAAGCTCATGAAGTTCTGTGATTG
EST: AGTTCTACCCTGTGCAGACCGAGGATACTCCTGACATATCAAATGTTAAG GCACCGTTTATAAACAGGTATTATGGGAAAGCTCATGAAGTTCTGTGATTG
genomic: AGTTCTACCCTGTGCAGACCGAGGATACTCCTGACATATCAAATGTTAAGgtacaatttt ... tgtctttcagGCACCGTTTATAAACAGGTATTATGGGAAAGCTCATGAAGTTCTGTGATTG
actacaactcattaatctttaagtagtaattattgttgtttggaatgtctttcagGCACCGTTTATAAACAGGTATTATGGGAAAGCTCATGAAGTTCTGTGATTGGGCTCATCAACCACCAGTATTTCTACTGCAAGAGATGCCAAGTGGTTTG
tgtctttc CT-rich tract
attaatctttaagtag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggacttattttatttgtgtcctctgtacaaattttgcaagaaataactacaactcattaatctttaagtagtaattattgttgtttggaatgtctttcagGCACCGTTTATAAACAGGTATTATGGGAAAGCTCATGAAGTTCTGTGATTGGGCTCATCAACCACCAGTATTTCTACTGCAAGAGATGCCAAGTGGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - tgtcctc
- - - - - - - - - - - - - acaaatt
- - - - - - - - - - - - - - - - - - - -gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - -caactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgg