Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ctacgaactaattctacCTCACCATCCTCTCAATATGCAATACAATAGTGCAATAATCAAACTTGCATTTTATGCC

Basic information

species Vitis vinifera
transcript Vv07s0005g03440.t01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110393010|gb|EC957786.1|EC957786
EST:     TTTCTCTTGCAATACATGTTAGATTTATTTGTATTGAACTGATTCTACCT                         C--ACCATCCTCTCAATATGCAATACAATAGTGCAATAATCAAACTTGC
genomic: TTTCTCTTGCAATACAAGTTAGATTTATTTGTATTGAACTGATTCTACCTctacgaacta ... ctaattctacCTCACCATCCTCTCAATATGCAATACAATAGTGCAATAATCAAACTTGC
EST: gi|28962383|gb|CB341416.1|CB341416
EST:     TTTCTCTTGCAATACATGTTAGATTTATTTGTATTGAACTGATTCTACCT                         C--ANCATCCTCTCAATATGCAATACAATAGTGCAATAATCAAACTTGCAT
genomic: TTTCTCTTGCAATACAAGTTAGATTTATTTGTATTGAACTGATTCTACCTctacgaacta ... ctaattctacCTCACCATCCTCTCAATATGCAATACAATAGTGCAATAATCAAACTTGCAT
EST: gi|29784864|gb|CB341349.2|CB341349
EST:     TTTCTCTTGCAATACATGTTAGATTTATTTGTATTGAACTGATTCTACCT                         C--ACCATCCTCTCAATATGCAATACAATAGTGCAATAATCAAACTTGCAT
genomic: TTTCTCTTGCAATACAAGTTAGATTTATTTGTATTGAACTGATTCTACCTctacgaacta ... ctaattctacCTCACCATCCTCTCAATATGCAATACAATAGTGCAATAATCAAACTTGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacgaactaattctacCTCACCATCCTCTCAATATGCAATACAATAGTGCAATAATCAAACTTGCATTTTATGCC
                                           aactaat  putative branch site (score: 2)
                                                                                 aactaatt  TA-rich tract