Sequence
atgc intronic sequence ATGC exonic sequencegtttgttttcatttcttcacgtcttctactctctttgcttcctttctctatctttgttaattattattatttttctacttatacttcatcttcttccaatgctacagTTTGTTTGGATGGAACTCTACCTGGTTATCATTTCCATCCGGGTTTTGGATCAGGTGCCAACAGCTGGCTCATTCAATTGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g02440.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA19G41030.2 (Glycine max), 3'ss of exon 1
gtttgttttcatttcttcacgtcttctactctctttgcttcctttctctatctttgttaattattattatttttctacttatacttcatcttcttccaatgctacagTTTGTTTGGATGGAACTCTACCTGGTTATCATTTCCATCCGGGTTTTGGATCAGGTGCCAACAGCTGGCTCATTCAATTGGAG
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-tttatctaaactcaacgtgaaatcaaacatgcacaaatctctcactccacttcaattgcatact-caagatttatatttttgttttgtcctgt---attgc--cagTCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGATCTGGGGCAAATAGTTGGCTCATTCAATTGGAG
upper sequence: Vv07s0005g02440.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA03G38430.2 (Glycine max), 3'ss of exon 1
gtttgttttcatttcttcacgtc---ttctactctctttgcttcctttctctatctttgttaattattattatttttctacttatacttcatcttcttccaatgctacagTTTGTTTGGATGGAACTCTACCTGGTTATCATTTCCATCCGGGTTTTGGATCAGGTGCCAACAGCTGGCTCATTCAATTGGAG
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----ttttagatgactcaacgtgaaatcaaacatgcaccaatctctcactccacttcaattgcatact-caagatttatatttttgttttgtcctgtattgg-----cagTCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGATCTGGGGCAAATAGTTGGCTCATTCAATTGGAG
upper sequence: Vv07s0005g02440.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT2G46930.1 (Arabidopsis thaliana), 3'ss of exon 1
gtttgttttcatttcttcacgtcttctactctctttgcttcctttctctatctttgttaattattattatttttctacttatacttcatcttcttccaatgctacagTTTGTTTGGATGGAACTCTACCTGGTTATCATTTCCATCCGGGTTTTGGATCAGGTGCCAACAGCTGGCTCATTCAATTGGAG
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-----tccttctttgaatatgtttccctcaaatttgatattgtcgagttttaaaggtcagtcctttatctgaaattacttgaatattatcactt--cattaatgcagTGTGCCTGGATGGAACACTACCTGGTTATCATCTACACCCTGGTTCTGGATCAGGAGCTAACCGGTGGCTCATCCAACTCGAG
upper sequence: Vv07s0005g02440.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT3G62060.1 (Arabidopsis thaliana), 3'ss of exon 1
gtttgttttcatttcttcacgtcttctactctctttgcttcctttctctatctttgttaattattattatttttctacttatacttcatcttcttccaa--tgctacagTTTGTTTGGATGGAACTCTACCTGGTTATCATTTCCATCCGGGTTTTGGATCAGGTGCCAACAGCTGGCTCATTCAATTGGAG
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------ttctgttgctcgatttcgtagact-tctttgaatctttggtggattactttt--tgaatgttgtgatgatgattagtgtttattcaactctaaattggtgcagTGTGCTTAGATGGGACGCTACCTGGTTATCATCTAGATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCTTATCCAGCTTGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgttaattattattatttttctacttatacttcatcttcttccaatgctacagTTTGTTTGGATGGAACTCTACCTGGTTATCATTTCCATCCGGGTTTTGGATCAGGTGCCAACAGCTGGCTCATTCAATTGGAG
tgttaat putative branch site (score: 3)
cttcatcttcttcca putative PPT
taattattattatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgttttcatttcttcacgtcttctactctctttgcttcctttctctatctttgttaattattattatttttctacttatacttcatcttcttccaatgctacagTTTGTTTGGATGGAACTCTACCTGGTTATCATTTCCATCCGGGTTTTGGATCAGGTGCCAACAGCTGGCTCATTCAATTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG