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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctctcttttctttccaaaacctagcatatcttttattttccctaaatgtctgtttcataatgatcatgtgtacttttacaaattagtgcccttgtagactgaatggaatggaaaaataaaagtaatctaaacattctaacaatgctattgaaacagGGTCTGGATGATCTCATCAGCCTATTCCGCCGACCTCCCTCTCGGAAGCTGAAAACAGCTTGATGACTGATGCAGAATAGTTTGTCAGAGCCATTTGTCT

Basic information

species Vitis vinifera
transcript Vv06s0080g00880.t01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30326785|gb|CD010047.1|CD010047
EST:     TGGGATCATATTTGATAGTGCTCTTCAGCTTTCTTGTCATCACAACTAGG                         GGTCTGGATGATCTCATCAGCCTATTCCGCCGACCTCCCTCTCGGAAGCTG
genomic: TGGGATCATATTTGATAGTGCTCTTCAGCTTTCTTGTCATCACAACTAGGgtattctctc ... attgaaacagGGTCTGGATGATCTCATCAGCCTATTCCGCCGACCTCCCTCTCGGAAGCTG
EST: gi|254915992|gb|GR903850.1|GR903850
EST:     TGGGATCATATTTGATAGTGCTCTTCAGCTTTCTTGTCATCACAACTAGG                         GGTCTGGATGATCTCATCAGCCTATTCCGCCGACCTCCCTCTCGGAAGCTG
genomic: TGGGATCATATTTGATAGTGCTCTTCAGCTTTCTTGTCATCACAACTAGGgtattctctc ... attgaaacagGGTCTGGATGATCTCATCAGCCTATTCCGCCGACCTCCCTCTCGGAAGCTG
EST: gi|352773102|gb|FQ470717.1|FQ470717
EST:     TGGGATCATATTTGATAGTGCTCTTCAGCTTTCTTGTCATCACAACTAGG                         GGTCTGGATGATCTCATCAGCCTATTCCGCCGACCTCCCTCTCGGAAGCTG
genomic: TGGGATCATATTTGATAGTGCTCTTCAGCTTTCTTGTCATCACAACTAGGgtattctctc ... attgaaacagGGTCTGGATGATCTCATCAGCCTATTCCGCCGACCTCCCTCTCGGAAGCTG
EST: gi|33404283|gb|CF209910.1|CF209910
EST:     TGGGATCATATTTGATAGTGCTCTTCAGCTTTCTTGTTATCACAACTAGG                         GGTCTGGATGATCTCATCAGCCTATTCCGCCGACCTCCCTCTCGGAAGCTG
genomic: TGGGATCATATTTGATAGTGCTCTTCAGCTTTCTTGTCATCACAACTAGGgtattctctc ... attgaaacagGGTCTGGATGATCTCATCAGCCTATTCCGCCGACCTCCCTCTCGGAAGCTG
EST: gi|32270593|gb|CD719752.1|CD719752
EST:     TGGGATCATATTTGATAGTGCTCTTCAGCTTTCTTGTCATCACAACTAGG                         GGTCTGGATGATCTCATCAGCCTATTCCGCCGACCTCCCTCTCGGAAGCTG
genomic: TGGGATCATATTTGATAGTGCTCTTCAGCTTTCTTGTCATCACAACTAGGgtattctctc ... attgaaacagGGTCTGGATGATCTCATCAGCCTATTCCGCCGACCTCCCTCTCGGAAGCTG
EST: gi|33404368|gb|CF209995.1|CF209995
EST:     TGGGATCATATTTGATAGTGCTCTTCAGCTTTCTTGTTATCACAACTAGG                         GGTCTGGATGATCTCATCAGCCTATTCCGCCGACCTCCCTCTCGGAAGCTG
genomic: TGGGATCATATTTGATAGTGCTCTTCAGCTTTCTTGTCATCACAACTAGGgtattctctc ... attgaaacagGGTCTGGATGATCTCATCAGCCTATTCCGCCGACCTCCCTCTCGGAAGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatggaatggaaaaataaaagtaatctaaacattctaacaatgctattgaaacagGGTCTGGATGATCTCATCAGCCTATTCCGCCGACCTCCCTCTCGGAAGCTGAAAACAGCTTGATGACTGATGCAGAATAGTTTGTCAGAGCCATTTGTCT
                                ttctaac  putative branch site (score: 1)
          aaaaataaaagtaatc  TA-rich tract