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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcccaaagaaagatgtattttcactctttgtgaatcctatttataacttgggggtagtaattctcttgtcttactgttgatttcagAGCACACCAAGGACAAGCAAATCCAGAGAAATGATGAATATTATGAAGGTGATAACGACAATGATCACAATATGGATGATGTATAAAGTAAGCTAGGCAG

Basic information

species Vitis vinifera
transcript Vv06s0061g01510.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01510.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA12G09190.1 (Glycine max), 3'ss of exon 13
----------gtaagtcccaaagaaagatgtattttcactctttgtgaatcctatttataacttgggggtagtaattctcttgtcttactgttgatttcagAGCACACCAAGGACAAGCAAATCCAGAGAAATGATGAATATTATGAAGGTGATAACGACAATGATCACAATATGGATGATGTATAAAGTAAGCTAGGCAG---
           |||        |||| |  |  |||  | || | |   ||| | ||    |    |  ||||   |   || |  || |  |  |||||||||||||  | |||||||| |||||| |  |||||||||||||||| ||||| || ||||||||||| |   || ||  |  || ||||    | | |     
aaaaaaatgtataaaatgtttggaaaaaaatcctttttccctat-tccgtccaacttggtgccaaagtttagtctattgattttgatatttctcttttcagAGCACACTCAAGACAAGCACATCCAGCGCGATGATGAATATTATGATGGTGACAATGACAATGATCAAA---TGAATATTTCATGAAGTGCAGTTGCCGTTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatcctatttataacttgggggtagtaattctcttgtcttactgttgatttcagAGCACACCAAGGACAAGCAAATCCAGAGAAATGATGAATATTATGAAGGTGATAACGACAATGATCACAATATGGATGATGTATAAAGTAAGCTAGGCAG
      tatttataactt  TA-rich tract