Sequence
atgc intronic sequence ATGC exonic sequence...gtctatatatttatgcatatatatatatatatatatatatatatatatatgctgtgtgcattgtctaaagtttacattattatttattttactgtaatagGTAGAGCTTTATGCAGACTATGATCCAAAGATGCTGCTTCCTTTTCTTCGCAGCAGTCAACACTATACACTCGAGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA11G19660.2 (Glycine max), 3'ss of exon 13
gtctatatatttatgcatatatatatatatatatatatatatatatatatgctgtgtgcattgtctaaagtttacattattatttattttactgtaat-agGTAGAGCTTTATGCAGACTATGATCCAAAGATGCTGCTTCCTTTTCTTCGCAGCAGTCAACACTATACACTCGAGAAG
| | || ||| ||| || | |||| || || ||| | | | | | | | || || || ||| | || ||| | ||||||| || ||||||||||||||||| ||||||||||| |||||||| || |||||||||||||| || || ||||||
---tctgctgctaaacatgaataagaatggct-tataaatgagattaaatgatttttttctggcacttaatataatttgtt-tttggtctaatgtgcttaggtagAACTCTATGCAGACTATGATCCTAAGATGCTGCTACCTTTTCTCCGTAGCAGTCAACACTACACCCTTGAGAAG
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA12G08840.1 (Glycine max), 3'ss of exon 13
--gtctatatatttatgcatatatatatatatatatatatatatatatatatgctgtgtgcattgtctaaagtttacattattatttattttactgtaat-agGTAGAGCTTTATGCAGACTATGATCCAAAGATGCTGCTTCCTTTTCTTCGCAGCAGTCAACACTATACACTCGAGAAG
|| | | || ||| ||| ||| | || || || ||| | | | | | | | | || || || ||| | || ||| | ||||||| || ||||| ||||||||||||||||||||||| |||||||| || |||||||||||||| || || ||||||
tgccctctgttgctaaacatgaata-ataatggcttgtaaatgagattaaatgattttttc-tggcacttaatataatttgtt-tttggtctaatgtgcttagGTAGAACTCTATGCGGACTATGATCCAAAGATGCTGCTACCTTTTCTCCGTAGCAGTCAACACTACACCCTTGAGAAG
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT1G08190.1 (Arabidopsis thaliana), 3'ss of exon 13
gtctatatatttatgcatatatatatatatatatatatatatatatatatgctgtgtgcattgtctaaagtttacattattatttattttactgtaatagGTAGAGCTTTATGCAGACTATGATCCAAAGATGCTGCTTCCTTTTCTTCGCAGCAGTCAACACTATACACTCGAGAAG
||| | | || | |||||| | || || | | || || | | ||| |||| || ||| || ||| | | | |||||||| || |||||||| || ||| | |||||||||||||| || || || ||||||||||| || | | || |||
------gtatgtgtagttaacttgatatatgga-atgaatttttccattctctttctcttttgcttaaatattttcttaaaatg-attaca-tattgtagGTAGAACTCTATGCAGAATACGATACTAAGATGCTGCTTCCGTTCCTACGTAGCAGTCAACATTACAAGTTAGAAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719571|gb|FC069391.1|FC069391EST: CATTGTTTGAAGTCAGTCAACATGCTGGGAAGGATTTTCATGACATGCAG GTAGAGCTTTATGCAGACTATGATCCAAAGATGCTGCTTCCTTTTCTTCGC
genomic: CATTGTTTGAAGTCAGTCAACATGCTGGGAAGGATTTTCATGACATGCAGgtatatagca ... actgtaatagGTAGAGCTTTATGCAGACTATGATCCAAAGATGCTGCTTCCTTTTCTTCGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatatgctgtgtgcattgtctaaagtttacattattatttattttactgtaatagGTAGAGCTTTATGCAGACTATGATCCAAAGATGCTGCTTCCTTTTCTTCGCAGCAGTCAACACTATACACTCGAGAAG
gtctaaa putative branch site (score: 3)
ttttact putative PPT
tctaaagtttacatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctatatatttatgcatatatatatatatatatatatatatatatatatgctgtgtgcattgtctaaagtttacattattatttattttactgtaatagGTAGAGCTTTATGCAGACTATGATCCAAAGATGCTGCTTCCTTTTCTTCGCAGCAGTCAACACTATACACTCGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - -tatgcat
- - - - - - - - - - - - - - - - - - - - - - - -tatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattg