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...ttgtagcaaccctttattaatattgattcattgcatctgatttgttccttacttttctgtgaatctgttttgataattgaatttggtgaattgtttgtagACTTGCTATTCAGAGGCTTGAGATTACAAAAAATGACTTGCGGCACAGAATTGCCAAGGAG
species | Vitis vinifera |
transcript | Vv06s0009g03240.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GCTAGAAAGACACCATCAACAGAATCAGTTGATTCATCTGGGGAAGAAGA ACTTGCTATTCAGAGGCTTGAGATTACAAAAAATGACTTGCGGCACAGAATEST: gi|161720660|gb|FC069921.1|FC069921
genomic: GCTAGAAAGACACCATCAACAGAATCAGTTGATTCATCTGGGGAAGAAGAgtaagatatt ... ttgtttgtagACTTGCTATTCAGAGGCTTGAGATTACAAAAAATGACTTGCGGCACAGAAT
EST: GCTAGAAAGACACCATCAACAGAATCAGTTGATTCATCTGGGGAAGAAGA ACTTGCTATTCAGAGGCTTGAGATTACAAAAAATGACTTGCGGCACAGAATEST: gi|71867350|gb|DT016405.1|DT016405
genomic: GCTAGAAAGACACCATCAACAGAATCAGTTGATTCATCTGGGGAAGAAGAgtaagatatt ... ttgtttgtagACTTGCTATTCAGAGGCTTGAGATTACAAAAAATGACTTGCGGCACAGAAT
EST: GCTAGAAAGACACCATCAACAGAATCAGTTGATTCATCTGGGGAAGAAGA ACTTGCTATTCAGAGGCTTGAGATTACAAAAAATGACTTGCGGCACAGAATEST: gi|161714132|gb|FC063831.1|FC063831
genomic: GCTAGAAAGACACCATCAACAGAATCAGTTGATTCATCTGGGGAAGAAGAgtaagatatt ... ttgtttgtagACTTGCTATTCAGAGGCTTGAGATTACAAAAAATGACTTGCGGCACAGAAT
EST: GCTAGAAAGACACCATCAACAGAATCAGTTGATTCATCTGGGGAAGAAGA ACTTGCTATTCAGAGGCTTGAGATTACAAAAAATGACTTGCGGCACAGAAT
genomic: GCTAGAAAGACACCATCAACAGAATCAGTTGATTCATCTGGGGAAGAAGAgtaagatatt ... ttgtttgtagACTTGCTATTCAGAGGCTTGAGATTACAAAAAATGACTTGCGGCACAGAAT
tccttacttttctgtgaatctgttttgataattgaatttggtgaattgtttgtagACTTGCTATTCAGAGGCTTGAGATTACAAAAAATGACTTGCGGCACAGAATTGCCAAGGAG
ttttgataattgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtagcaaccctttattaatattgattcattgcatctgatttgttccttacttttctgtgaatctgttttgataattgaatttggtgaattgtttgtagACTTGCTATTCAGAGGCTTGAGATTACAAAAAATGACTTGCGGCACAGAATTGCCAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - caaccct
- - - - - - - - - - - - - - - - gcatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattgaa