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...accaatgctgctttttttggcctaaaatattttggtgtacgtactagtgattcaccattttcattctggtctgacattactccttgctgatcccctacagTTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGAGCATTTGGAAGCTATGATTATAATCCACTCCTCGAGTCTCTAGAGGGAA
species | Vitis vinifera |
transcript | Vv06s0004g06020.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTG TTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGAEST: gi|46917547|gb|CN546876.1|CN546876
genomic: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTGgtaaaactgt ... tcccctacagTTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGA
EST: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTG TTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGAEST: gi|110703465|gb|EE080336.1|EE080336
genomic: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTGgtaaaactgt ... tcccctacagTTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGA
EST: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTG TTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGAEST: gi|30251461|gb|CB969194.1|CB969194
genomic: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTGgtaaaactgt ... tcccctacagTTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGA
EST: CCACAGCGGAAGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTG TTCAAGCCAGGATCCCCGGTTTGAAGNGGCCATGCAATTCAEST: gi|30251459|gb|CB969192.1|CB969192
genomic: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTGgtaaaactgt ... tcccctacagTTCAAGCCAG-ATCCCCGGTTTGAAGAGGCCATGCAATTCA
EST: CCACAGCGGAAGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTG TTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGGACTNGAEST: gi|110701622|gb|EE079402.1|EE079402
genomic: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTGgtaaaactgt ... tcccctacagTTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGA
EST: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGATAAGAGAGGCTGGACTG TTCAAGCCAGATCCCCGGTTTTGAA-AGGCCATGCAATTCATAAAAACTGGEST: gi|110384669|gb|EC949123.1|EC949123
genomic: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTGgtaaaactgt ... tcccctacagTTCAAGCCAGATCCCCGGTTT-GAAGAGGCCATGCAATTCATAAGAACTGG
EST: CCACAGCAGAAGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTG TTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGAEST: gi|28960619|gb|CB340317.1|CB340317
genomic: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTGgtaaaactgt ... tcccctacagTTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGA
EST: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTG TTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGAEST: gi|37190441|gb|CF609790.1|CF609790
genomic: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTGgtaaaactgt ... tcccctacagTTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGA
EST: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTG TTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTG-AEST: gi|30251485|gb|CB969218.1|CB969218
genomic: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTGgtaaaactgt ... tcccctacagTTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGA
EST: CCACAGCGGAAGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTG TTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGAEST: gi|30135822|gb|CB921160.1|CB921160
genomic: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTGgtaaaactgt ... tcccctacagTTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGA
EST: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTG TTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGAEST: gi|28960453|gb|CB340229.1|CB340229
genomic: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTGgtaaaactgt ... tcccctacagTTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGA
EST: CCACAGCAGATGAAGTCCTTAAGTTGCGCAAGAAAAGAGAGGCTGGACTG TTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGA
genomic: CCACAGCAGATGAAGTCCCTAAGTTGCGCAAGAAAAGAGAGGCTGGACTGgtaaaactgt ... tcccctacagTTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGA
agtgattcaccattttcattctggtctgacattactccttgctgatcccctacagTTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGAGCATTTGGAAGCTATGATTATAATCCACTCCTCGAGTCTCTAGAGGGAA
tgctgat putative branch site (score: 3)
tcccctac CT-rich tract
attttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accaatgctgctttttttggcctaaaatattttggtgtacgtactagtgattcaccattttcattctggtctgacattactccttgctgatcccctacagTTCAAGCCAGATCCCCGGTTTGAAGAGGCCATGCAATTCATAAGAACTGGAGCATTTGGAAGCTATGATTATAATCCACTCCTCGAGTCTCTAGAGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
-ccaatgc
- - - - - - - - - - cctaaaa
- - - - - - - - - - - - - - - - tggtgta
- - - - - - - - - - - - - - - - - - - - - - - - - ttcacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccttgc