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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgacagattgccagatttgtttcttttattttcttctagcaattttgtgtttctgagcaagcattgtactttgtttacagTGGCAATGTCCCATTTGTCTCAAGAACTATTCTCTAGAGAATGTTATCATTGATCCATATTTCAATCGCATCACATCCTCG

Basic information

species Vitis vinifera
transcript Vv06s0004g03180.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g03180.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G002999_T01 (Zea mays), 3'ss of exon 1
--------------------gcaag--tgacagattgccagatttgtttcttttattttcttctagcaattttgtg--tttctgag-caagcattgtact-ttgtttacagTGGCAATGTCCCATTTGTCTCAAGAACTATTCTCTAGAGAATGTTATCATTGATCCATATTTCAATCGCATCACATCCTCG
                     |||   |  |  ||   |     | ||  ||  |  || ||  |     | | ||  | ||| |  ||| | ||||  | ||| || ||||||||||| || || || || ||||| || |||||||||||  | || |||||||| ||||||||||||||||| || | |
gttcgactatttggacttatacaactttacctcatcctctacaatattgattgaaccttgtttcattttctctatgactatctaaatcaacctttgttttcttgcttgcagTGGCAATGCCCAATATGCCTGAAGAATTACTCTCTAGAGAACATAATAATTGATCCTTATTTCAATCGCATCACTTCTTTG

upper sequence: Vv06s0004g03180.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA11G15880.1 (Glycine max), 3'ss of exon 14
gcaagtgacagattgccagat-ttgtttcttttattttcttctagcaattttgtgtttctgagc---aagcattgtactttgtttacagTGGCAATGTCCCATTTGTCTCAAGAACTATTCTCTAGAGAATGTTATCATTGATCCATATTTCAATCGCATCACATCCTCG
    || |     |  || || || | |    |  |||   |   |||| | ||| || | ||    | | |||| | | | | |||||||||||||||| || |||||||| |||||| || | |||||| | |||||||| || ||||||||||||||||| ||   |
----gttaggttctaacaaatgttatgttgcatgatttaaaccc-caatgtagtgattttaagtctgatgaattgaattgtttctacagTGGCAATGTCCTATATGTCTCAAAAACTATGCTTTGGAGAATATCATCATTGACCCTTATTTCAATCGCATCACTTCTATG

upper sequence: Vv06s0004g03180.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA12G07590.1 (Glycine max), 3'ss of exon 14
gcaag----tgacagattgccagatttgtttcttttattttcttctagcaattttgtgtttctgagc---aagcattgtactttgtttacagTGGCAATGTCCCATTTGTCTCAAGAACTATTCTCTAGAGAATGTTATCATTGATCCATATTTCAATCGCATCACATCCTCG
| |||    | ||| || |  | ||| |  |    | |   || |    | || ||  ||| | ||    | | |||| | | | | | |||||||||||||| || |||||||| |||||| |  | |||||| | |||||||| || ||||||||||||||||| ||   |
gtaaggttctaacaaat-gttatatt-gcatgaagtgtccactccccaaagttgtg-atttttaagtctgatgaattgaattgtttgttcagTGGCAATGTCCTATATGTCTCAAAAACTATGCGTTGGAGAATATCATCATTGACCCTTATTTCAATCGCATCACTTCTATG

upper sequence: Vv06s0004g03180.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: PP1S62_62V6.1 (Physcomitrella patens), 3'ss of exon 13
------------gcaagtga-cagattgcca-gatttgtttcttttattttcttctagcaattttg-tgtttctgagcaagcattgtactttgtttacagTGGCAATGTCCCATTTGTCTCAAGAACTATTCTCTAGAGAATGTTATCATTGATCCATATTTCAATCGCATCACATCCTCG
              | |    ||||| |  | | | ||    ||     |  || |     |  || |||||    || |   || |        | |||||||||||||| |||||||| |||||||||||| ||||  || | |||||||| || | ||||||||| || |||  | ||
ctgctcagtataatacgcactcagatagtaaaggtatgcaggttaaccctctttatttttgtactgatgttttcccgctacttttttgtgactgatgcagTGGCAATGTCCAATTTGTCTGAAGAACTATTCTATAGAACATTTAATCATTGACCCTTTTTTCAATCGGATTACAAACGCG

upper sequence: Vv06s0004g03180.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: PP1S94_39V6.1 (Physcomitrella patens), 3'ss of exon 13
------------------------------------------------gcaagtgacagattgccagatttgtttcttttattttcttctagcaattttgtgtttctg--agcaagcattgtact--ttgtt-----tacagTGGCAATGTCCCATTTGTCTCAAGAACTATTCTCTAGAGAATGTTATCATTGATCCATATTTCAATCGCATCACATCCTCG
                                                  |   | || | | |   | | |||    |  |      |     | ||| || || |   | ||     |||  |  ||||      | ||||||||||| || |||||||| |||||||||||  |||||||| | ||||| || || | ||| ||||  || |||    ||
gtatttgccatttatcggagtgtagctgttaatctttgtggctttgataaagcaggcataattctgaaatggttgagat-gtaagggacagttgactttatggttgtaccaacagtttctgtggtaattgtggcgaatgcagTGGCAATGCCCGATTTGTCTGAAGAACTATTCAATAGAGAATCTGATCATCGACCCTTTTTTTAATCAGATTACAAATGCG

upper sequence: Vv06s0004g03180.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: PP1S10_326V6.1 (Physcomitrella patens), 3'ss of exon 11
------------------------------------------------------------------------------------gcaagtgacagattgccagatttgtttcttttatttt--cttctagcaattttgtgtttctgagcaagcattgtactttgtttacagTGGCAATGTCCCATTTGTCTCAAGAACTATTCTCTAGAGAATGTTATCATTGATCCATATTTCAATCGCATCACATCCTCG
                                                                                        |||     | ||  ||  |||     | | ||    | |  ||    |  | |||    ||    |||||   ||  || |||||||||||||| |||||||| ||||||||||   |||| ||  | || ||||| || | ||| ||||| || ||     ||
gtattttctacgtatcattatgtatatgccaatttaaggtactgcttagtagtttttttaatatatcagattactctgtgtattttctgtgtttagtagctcgaactgtgagggtgagttgaattacctgcgtactaatattttcctgcggaaattgtggctt--ttgcagTGGCAATGTCCAATTTGTCTGAAGAACTATTGCATAGATAACCTGATAATTGACCCTTTTTTTAATCGGATTACTAATGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattttcttctagcaattttgtgtttctgagcaagcattgtactttgtttacagTGGCAATGTCCCATTTGTCTCAAGAACTATTCTCTAGAGAATGTTATCATTGATCCATATTTCAATCGCATCACATCCTCG
                                           ctttgttt  CT-rich tract
               aattttgt  TA-rich tract