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...tttgtgtacttaagtatacacttaatttttgtggttgtcattttaattgaggcttctcaaatttcaattcttactttatgctttttccgtaaaatttcagGGCGAGTCTGCAGGTGGAAAGCCTCCATGGCATGGG
species | Vitis vinifera |
transcript | Vv06s0004g02700.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTGATTCACAGTGGATTATTCATAAAGTAGTACCTTCTCTTGGGAGCCAA GGCGAGTCTGCAGGTGGAAAGCCTCCATGGCATGGGEST: gi|30330471|gb|CD013733.1|CD013733
genomic: TTGATTCACAGTGGATTATTCATAAAGTAGTACCTTCTCTTGGGAGCCAAgtaagtcata ... aaaatttcagGGCGAGTCTGCAGGTGGAAAGCCTCCATGGCATGGG
EST: TTGATTCACAGTGGATTATTCATAAAGTAGTACCTTCTCTTGGGAGCCAA GGCGAGTCTGCAGGTGGAAAGCCTCCATGGCATGGGEST: gi|110362972|gb|EC926537.1|EC926537
genomic: TTGATTCACAGTGGATTATTCATAAAGTAGTACCTTCTCTTGGGAGCCAAgtaagtcata ... aaaatttcagGGCGAGTCTGCAGGTGGAAAGCCTCCATGGCATGGG
EST: TTGATTCACAGTGGATTATTCATAAAGTAGTCCCTTTTCTTGGGAGCCAA GGCGAGTCTGCAGGTGGAAAGCCTCCATGGCATGGGEST: gi|30330504|gb|CD013766.1|CD013766
genomic: TTGATTCACAGTGGATTATTCATAAAGTAGTACCTTCTCTTGGGAGCCAAgtaagtcata ... aaaatttcagGGCGAGTCTGCAGGTGGAAAGCCTCCATGGCATGGG
EST: TTGATTCACAGTGGATTATTCATAAAGTAGTACCTTCTCTTGGGAGCCAA GGCGAGTCTGCAGGTGGAAAGCCTCCATGGCATGGGEST: gi|110416826|gb|EC982832.1|EC982832
genomic: TTGATTCACAGTGGATTATTCATAAAGTAGTACCTTCTCTTGGGAGCCAAgtaagtcata ... aaaatttcagGGCGAGTCTGCAGGTGGAAAGCCTCCATGGCATGGG
EST: TTGATTCACAGTGGATTATTCATAAAGTAGTACCTTCTCTTGGGAGCCAA GGCGAGTCTGCAGGTGGAAAGCCTCCATGGCATGGG
genomic: TTGATTCACAGTGGATTATTCATAAAGTAGTACCTTCTCTTGGGAGCCAAgtaagtcata ... aaaatttcagGGCGAGTCTGCAGGTGGAAAGCCTCCATGGCATGGG
attgaggcttctcaaatttcaattcttactttatgctttttccgtaaaatttcagGGCGAGTCTGCAGGTGGAAAGCCTCCATGGCATGGG
ttcttac putative branch site (score: 2)
aaatttcaattcttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtgtacttaagtatacacttaatttttgtggttgtcattttaattgaggcttctcaaatttcaattcttactttatgctttttccgtaaaatttcagGGCGAGTCTGCAGGTGGAAAGCCTCCATGGCATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - cttctca