Sequence
atgc intronic sequence ATGC exonic sequence...aatttatatatgttgtcactctagcatatttatgggattgaatccttttttcattataatattatttgtttaactatcagaaataatatctcactttcagGTTATTAGGAGCGTCAGTCAGTGGTCTGCTGGAACAAGCCAAGTTGAAGACAGCACTCATAATGCTTATTGCTCCCTTATAGAAAAGGCAGAACACTTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA15G16270.1 (Glycine max), 3'ss of exon 12
aatttatatatgttgtcactctag--catatttatgggattgaatccttttttcattataatattatttgtttaactatcagaaataatatctcactttcagGTTATTAGGAGCGTCAGTCAGTGGTCTGCTGGAACAAGCCAAGTTGAAGACAGCACTCATAATGCTTATTGCTCCCTTATAGAAAAGGCAGAACACTTTA
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-attacattatcttatttcttttgttctcgtcacttttatgctgccaatttttcaacatag-gttgttgtattttctctcattaaaataaccaaattgatagGTTATTAGGAGCGTAAGTCAATGGTCTGCTGGAACAAGTCAAACTGAAGAGAGCATCCACAATGCCTATTGCTCTCTTATTGAGAAAGCTGAATACTTCA
upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 12
aatttatatatgttgtcactctagcatatttatgggattgaatccttttttcattataatattatttgtttaactatcagaaat---aatatctcactttcagGTTATTAGGAGCGTCAGTCAGTGGTCTGCTGGAACAAGCCAAGTTGAAGACAGCACTCATAATGCTTATTGCTCCCTTATAGAAAAGGCAGAACACTTTA
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-cattacat-tgtcttatttcttttgttcttgtcactttta-tgctgtcaatttttcaacattggttgttgtattttctctcattaaaataacctattgatagGTTATTAGGAGTGTGAGTCAATGGTCTGCTGGAACAAGTCAAACCGAAGAGAGCATCCACAATGCTTATTGCTCTCTTATTGAGAAAGCTGAATACTTCA
upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT3G16785.1 (Arabidopsis thaliana), 3'ss of exon 12
-----------------------------------------------------------------------------------aatttatat-atgttgtcactctagcatat---ttatgggattgaatcctt-ttttcattataatattatttgtttaactatcagaaataat--atctcactttcagGTTATTAGGAGCGTCAGTCAGTGGTCTGCTGGAACAAGCCAAGTTGAAGACAGCACTCATAATGCTTATTGCTCCCTTATAGAAAAGGCAGAACACTTTA
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gtgggtgttatgaaagtttatatataccaattatatgtggaatttcaaatctgaatagagctgatgctattatgtacgatcctattctgtttcatgct-tggcttcagcatacaagctttaaaattttattgtgatcataataataagaatttcccttcaacatttagcactgattagaactattttcagATTATACGAAGTGTCAGTCAGTGGTCTGCCGGTACAAGCCAAGTTGAAGAGAGTATCCATTCTGCTTACCGTTCTCTCATTGACAAAGCTGAACATTTTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttttcattataatattatttgtttaactatcagaaataatatctcactttcagGTTATTAGGAGCGTCAGTCAGTGGTCTGCTGGAACAAGCCAAGTTGAAGACAGCACTCATAATGCTTATTGCTCCCTTATAGAAAAGGCAGAACACTTTA
atctcac putative branch site (score: 3)
tctcactttc CT-rich tract
tcattataatattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatttatatatgttgtcactctagcatatttatgggattgaatccttttttcattataatattatttgtttaactatcagaaataatatctcactttcagGTTATTAGGAGCGTCAGTCAGTGGTCTGCTGGAACAAGCCAAGTTGAAGACAGCACTCATAATGCTTATTGCTCCCTTATAGAAAAGGCAGAACACTTTA
- - - - - tgttgtc
- - - - - - - - - ctctagc
- - - - - - - - - - - - - - -ttatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataa