Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattgtagcaattatgtttcatttttatttagatggagggatcatatcttcattggaaatgctgtagtgtgggcttttgtgaactgattttataatggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTCGATACTTCAAGGACGCTTATGATAGG

Basic information

species Vitis vinifera
transcript Vv05s0077g00950.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: LOC_Os01g19450.1 (Oryza sativa), 3'ss of exon 13
gtaaattgtagcaattatgtttcatttttatttagatggagggatcatatcttca-----ttggaaatgctgtagtgtgggcttttgtgaactgattttataatggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTCGATACTTCAAGGACGCTTATGATAGG
               |  | ||| | |  || || ||| |   ||  |   || |     ||| | ||  |  ||  | || || ||   | || | ||  |||     |||| ||  | |||||||| ||||| |||||||| || |||||||||||||| || |||||||| || || |||||||| 
--------------gtgagcttcttctacatgtacatgtaaacattgtccgttaagttgtttgaatatattacagcatagg-ttatgaagattgctattgaaatattg-cagGTTTATTGACAATTGGCCCCCGTTTTGGTGGTGCAATTGATGATGCTGCCCGGTACTTCAAAGATGCATATGATAGA

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G002416_T01 (Zea mays), 3'ss of exon 8
gtaaattgtagcaattatgtttcatttttatttagatggagggatcatatcttcattggaaatgctgtagtgtgggcttttgtgaactgattttataatggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTCGATACTTCAAGGACGCTTATGATAGG
|| |    |   |  | |   |        | ||   |  |   |||||     ||||  ||| ||      ||     ||   |    ||| | | ||    ||||| ||  | || ||||||||||| || |||||||| ||||||||||| || ||||||||||| || || | |||||||
gtgagcaatttgatctctacgtgcaaaacttctacccgttgatttcatag----attgccaatacttacagctgaaacattaaaatggaattctgttatc---acagGATTATTGACGATTGGTCCCCGTTTCGGTGGAGCAATTGATGATGCAGCCCGATACTTCAAAGATGCATGTGATAGG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G045534_T01 (Zea mays), 3'ss of exon 1
gtaaattgtagcaattatgtttcatttttatttagatggagggatcatatcttcattggaaatgctg-tagtgtgggcttttg------tgaactgattttataatggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTCGATACTTCAAGGACGCTTATGATAGG
          |  |   | ||| |||| ||  |  |  ||      ||   || |||| | |   |  |  | ||  ||  ||      | ||  |  ||| |  |   | |||| ||  | |||||||| ||||| ||||| ||||| ||||||||||| || ||||||||||| || || | |||||||
----------gtgagc-tatttgatttctacatgca--gaacttctatcctttgattgcatagattactgatatgtactgctgaaacattaaaacggctttctgttt--atcagGATTATTGACAATTGGCCCCCGTTTTGGCGGAGCAATTGATGATGCAGCCCGATACTTCAAAGATGCATGTGATAGG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA07G36840.1 (Glycine max), 3'ss of exon 14
gtaaattgtagcaattatgtttcatttttatttagatggagggatcatatct---tcattggaaatgct-gtagtgtgg-gcttttgtgaactgattttataatg-------gaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTCGATACTTCAAGGACGCTTATGATAGG
||||||    ||   || || |   |  |  | |  |  | |  |  |||||   | | |||   || | |||   |     ||   | || || |    |||||       |||||||| ||||||||||||||||| |||||||| || || ||||||||||||||||| || |||||||| |||||||| |||
gtaaatacaggcttcta-gtctttctactgctgaagt--atgcttggtatctgactaagtggccgtgtttgtacactattatttccattaaatggtca-gtaatgagcttatgaaacagGTTTGCTTACAATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGTTATTTCAAGGATGCTTATGACAGG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA17G03700.1 (Glycine max), 3'ss of exon 12
gtaaattgtagcaattatgtttcatttttatttag-atggagggatcatatcttcattggaaatgctgtagtgtgg-gcttttgtgaactgattttataatg-------gaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTCGATACTTCAAGGACGCTTATGATAGG
||||||    ||   ||   ||  |  |  |  || |||   ||    |  ||   |        |||||   |     ||   | || ||||    |||||       |||||||| ||||||||||||||||| |||||||| || || ||||||||||||||||| || |||||||| || ||||| |||
gtaaatacaggcttctagtctttctactgctgaagtatgcttggtatctgactaagtccccgtgtctgtacactattatttccattaaatgatca-gtaatgagcttatgaaacagGTTTGCTTACAATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGCTATTTCAAGGATGCCTATGACAGG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA15G15010.1 (Glycine max), 3'ss of exon 12
---------------------gtaaattgtag---caattatgtttcatttttatttagatg---gagggatcatatcttcat--tggaaatgctgtagtgtgggcttttgtgaac--tgattttataatggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTCGATACTTCAAGGACGCTTATGATAGG
                     || |||| | |    |   ||  |     | |  | || ||    |    |  |||  | ||  |   |||||  ||     |    |  ||||   |||  || |    ||||||||  |||||||||||||||| |||||||| || || ||||||||||||||||| ||||||||||| ||| |||| |||
gtaaatacaagcctttaatctgtcaattattgatgtaggcatagtatgaatgtgataaggtgaccaaaactttgtatgctaataataataatgccataaaacagttagtaatgaataatgagcttct----gaaacagGTATGCTTACAATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGCTACTTCAAGGATGCTCATGACAGG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA15G15020.2 (Glycine max), 3'ss of exon 13
--------------gtaaattgt-agcaattatgtttcatttttatttagatggagggatcatatcttcat-tggaaatgctgtagtgtgggcttttgtgaactgattttataatggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTCGATACTTCAAGGACGCTTATGATAGG
               |||  ||| | | | |    |   | ||   |  ||||| | || || | |||  | ||  |||  ||   |       || || |   | || |      ||| |||| ||||| ||||||||||| |||||||| || || || |||||||||||||| ||||||||||| ||| |||| |||
gtaaatacatgcctctaatctgtcaactactggtgtaggtattgtatctgatggggtgaccaaaactttttatgctaataatgccataaaatggttagtaacgagcttct------gaatcagGTTTGCTAACAATTGGTCCTCGATTTGGGGGTGCCATCGATGATGCTGCTCGCTACTTCAAGGATGCTCATGACAGG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT5G49460.1 (Arabidopsis thaliana), 3'ss of exon 13
gtaaattgtagcaattatgtttcatttttatttagatggagggatcatatcttcattggaaatgctgtagtgtgggcttttgtgaactgattttataatggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTCGATACTTCAAGGACGCTTATGATAGG
              | |     ||||||| ||       |     ||||  |||  |     | | ||        || |    |  | |    ||||    |||||| ||  | || |||||||||||||||||||| || |||||||| ||||||||||||||||| ||||| | ||| |||
-------------gtcagtcaacattttttttcccccacaaaacacataagttctctt----taccgtccaacaatctctaagaatgttaaaccataa----aacagGTTTATTGACCATTGGTCCCCGATTTGGTGGTGCCATTGATGACGCTGCTCGATACTTCAAAGACGCGTGTGACAGG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT3G06650.1 (Arabidopsis thaliana), 3'ss of exon 13
gtaaattgtagcaattatgtttcatttttatttagatggagggatcatatcttcattggaaat-gctgtagtgtgggcttttgtgaactgattttataatggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTCGATACTTCAAGGACGCTTATGATAGG
                    |  |||   ||    ||  |   |     | || | || |  | ||| ||   |   ||| ||   | |  | ||  ||   |||||||  |  | ||||| |||||  |||||||||| || ||||||||||| || ||||||||||||||||||| ||| |||
-------------------gtgaattaacatcccaatccatcaact---ttttaagtgaagtttgctatataataa-cttatgctgattattcttcaaac--aaacagGTCTATTAACAATCGGTCCTAGATTTGGTGGTGCCATTGATGATGCAGCACGATACTTCAAGGACGCTTGTGACAGG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: PP1S35_384V6.1 (Physcomitrella patens), 3'ss of exon 12
----------------gtaaattgtagcaatt------atgtttcattttta---tttagatggagggatcatatcttcat-----tggaaatgctgtagtgtgggcttttgtgaactgattt----tataatggaaa---cagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTCGATACTTCAAGGACGCTTATGATAGG-----------------------
                ||   ||  | ||| |      ||||  |  | | |   | | ||    || |   | |  | ||     |||| ||    |  |    | | ||    | ||  ||    ||||    |||   ||||  |||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||| ||| |||| | |                       
gtacgaactttctttggtccgttaaatcaactttctgaatgtcacgatctaagaatgtcgaaaatggcactgtgttctgatgctgctggagataaccttctaaatgatgttactgattgtcttccactatatcttaaatatcagGACTGCTCACAATTGGCCCCCGATTTGGTGGAGCTATCGATGATGCTGCTCGTTACTTTAAGGAAGCTCATGACAAGGGCTTGACACCTTATGACTTTGT

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: PP1S46_63V6.2 (Physcomitrella patens), 3'ss of exon 12
-------gtaaattgtagcaattatgtttcatttttatttagatggagggatcatatcttcattggaaat------gctgtagtgtgggcttttgtg-aactgattt-------tataatggaaac-agGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTCGATACTTCAAGGACGCTTATGATAGG-----------------------
        ||||||| || |  ||||||   | |  |  |      |       |    |   |  |  |      | | || |        ||||| |||||||||       | ||||| | || |||  | || |||||||| || || ||||||||||||||||||||||||||||| || || |  || ||  |||| |                         
gtacagtctaaattgcagaagctatgttatgtatgaagctcttgaaatattctttgctattgctaaagcttgccccgttatacttatcagaattgtgtaactgatttatatttttttaatgaatactagGTCTTCTCACAATTGGCCCTCGTTTTGGTGGAGCTATTGATGATGCTGCTCGCTATTTTAGAGAAGCCCATGACAACGGATTATCGCCTTACGCATTTGT

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: EFJ31368 (Selaginella moellendorffii), 3'ss of exon 12
gtaaattgtagcaattatgtttcatttttatttagatggagggatcatatcttcattggaaatgctgtagtgtgggcttttgtgaactgattttataatggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTCGATACTTCAAGGACGCTTATGATAGG
                                                   ||| |  |  |  |  |  | ||   ||||   |||| ||||  |  ||    ||||| | |||||||| || || || ||||| ||||||||||||||||| || || |||||||| || ||||| || | |
--------------------------------------------------gttcgt--gtgactccttcatttgtatttttac-aact-atttgcttgtg----cagGCCTTCTTACAATAGGACCTCGTTTTGGCGGAGCTATTGATGATGCAGCCCGCTACTTCAAAGATGCTTACGACAAG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: EFJ06573 (Selaginella moellendorffii), 3'ss of exon 12
gtaaattgtagcaattatgtttcatttttatttagatggagggatcatatcttcattggaaatgctgtagtgtgggcttttgtgaactgattttataatggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTCGATACTTCAAGGACGCTTATGATAGG
                                                         |    ||        | ||  ||| |  |   ||||| |  ||    ||||| | |||||||| || || || ||||| ||||||||||||||||| || || |||||||| || ||||| || | |
---------------------------------------------------------gttcgtgtgactccatcggtatttttacaactattttcttgtg----cagGCCTTCTTACAATAGGACCTCGTTTTGGCGGAGCTATTGATGATGCAGCCCGCTACTTCAAAGATGCTTACGACAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27582208|gb|CB004903.1|CB004903
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|110426805|gb|EC993228.1|EC993228
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|33404107|gb|CF209734.1|CF209734
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|110702957|gb|EE079380.1|EE079380
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTTGTATCCAGTCTTGTCTCAA                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|110373416|gb|EC937652.1|EC937652
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|110413029|gb|EC978798.1|EC978798
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTTGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|27584666|gb|CB007361.1|CB007361
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|30303560|gb|CB980354.1|CB980354
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|110714789|gb|EE092094.1|EE092094
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTTGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|33402606|gb|CF208233.1|CF208233
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|30303498|gb|CB980292.1|CB980292
EST:     TCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|33404094|gb|CF209721.1|CF209721
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|33401630|gb|CF207257.1|CF207257
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|110698258|gb|EE075587.1|EE075587
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTTGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|110703274|gb|EE079977.1|EE079977
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTTGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|30135665|gb|CB921003.1|CB921003
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAN                         GCTTGCTTACAATTGNTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|30135061|gb|CB920399.1|CB920399
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAN                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|110699517|gb|EE076586.1|EE076586
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTTGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|110372955|gb|EC937153.1|EC937153
EST:     TGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|110386438|gb|EC951032.1|EC951032
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|110700501|gb|EE078609.1|EE078609
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTTGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|30125093|gb|CB910432.1|CB910432
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
EST: gi|110426539|gb|EC992952.1|EC992952
EST:     TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAG                         GCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC
genomic: TATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGgtaaattgta ... atggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattggaaatgctgtagtgtgggcttttgtgaactgattttataatggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTCGATACTTCAAGGACGCTTATGATAGG
                                aactgat  putative branch site (score: 3)
                                aactgattttataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaattgtagcaattatgtttcatttttatttagatggagggatcatatcttcattggaaatgctgtagtgtgggcttttgtgaactgattttataatggaaacagGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTCGATACTTCAAGGACGCTTATGATAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT