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gtctgtatcaatttacaaatccccaacattactgtctaggcttgttgaggctctaaactcaggagctactgtactggtactcagattcatggggaatgttatctagatatatataaaaatggtggaaaattgcttccctttgcagATAGGAGGAGCTAGTGAAGCTGAAGTTAGTGAGAAGAAAGATAGGGTTACAGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATTGTACCAG
species | Vitis vinifera |
transcript | Vv05s0051g00340.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGTTGCAAGAAAGGTTGGCCAAGCTTTCTGGTGGTGTTGCTGTCTTGAAG ATAGGAGGAGCTAGTGAAGCTGAAGTTAGTGAGAAGAAAGATAGGGTTACAEST: gi|33404079|gb|CF209706.1|CF209706
genomic: AGTTGCAAGAAAGGTTGGCCAAGCTTTCTGGTGGTGTTGCTGTCTTGAAGgtctgtatca ... ccctttgcagATAGGAGGAGCTAGTGAAGCTGAAGTTAGTGAGAAGAAAGATAGGGTTACA
EST: AGTTGCAAGAAAGGTTGGCCAAGCTTTCTGGTGGTGTTGCTGTCTTGAAG ATAGGAGGAGCTAGTGAAGCTGAAGTTAGTGAGAAGAAAGATAGGGTTACAEST: gi|110363713|gb|EC927323.1|EC927323
genomic: AGTTGCAAGAAAGGTTGGCCAAGCTTTCTGGTGGTGTTGCTGTCTTGAAGgtctgtatca ... ccctttgcagATAGGAGGAGCTAGTGAAGCTGAAGTTAGTGAGAAGAAAGATAGGGTTACA
EST: AGTTGCAAGAAAGGTTGGCCAAGCTTTCTGGTGGTGTTGCTGTCTTGAAG ATAGGAGGAGCTAGGGAAGCTGAAGTTAGTGAGAAGAAAGATAGGGTTACAEST: gi|77586617|gb|DV222437.1|DV222437
genomic: AGTTGCAAGAAAGGTTGGCCAAGCTTTCTGGTGGTGTTGCTGTCTTGAAGgtctgtatca ... ccctttgcagATAGGAGGAGCTAGTGAAGCTGAAGTTAGTGAGAAGAAAGATAGGGTTACA
EST: AGTTGCAAGAAAGGTTGGCCAAGCTTTCTGGTGGTGTTGCTGTCTTGAAG ATAGGAGGAGCEST: gi|110700181|gb|EE077929.1|EE077929
genomic: AGTTGCAAGAAAGGTTGGCCAAGCTTTCTGGTGGTGTTGCTGTCTTGAAGgtctgtatca ... ccctttgcagATAGGAGGAGC
EST: AGTTGCAAGAAAGGTTGGCCAAGCTTTCTGGTGGTGTTGCTGTCTTGAAG ATAGGAGGAGCTAGTGAAGCTGAAGTTAGTGAGAAGAAAGATAGGGTTACAEST: gi|77587495|gb|DV222914.1|DV222914
genomic: AGTTGCAAGAAAGGTTGGCCAAGCTTTCTGGTGGTGTTGCTGTCTTGAAGgtctgtatca ... ccctttgcagATAGGAGGAGCTAGTGAAGCTGAAGTTAGTGAGAAGAAAGATAGGGTTACA
EST: AGTTGCAAGAAAGGTTGGCCAAGCTTTCTGGTGGTGTTGCTGTCTTGAAG ATAGGAGGAGCTAGTGAAGCTGAAGTTAGTGAGAAGAAAGATAGGGTTACAEST: gi|34547812|gb|CF516044.1|CF516044
genomic: AGTTGCAAGAAAGGTTGGCCAAGCTTTCTGGTGGTGTTGCTGTCTTGAAGgtctgtatca ... ccctttgcagATAGGAGGAGCTAGTGAAGCTGAAGTTAGTGAGAAGAAAGATAGGGTTACA
EST: TTGCAAGAAAGGTTGGCCAAGCTTTCTGGTGGTGTTGCTGTCTTGAAGG AT-CNAGGAGCTAGTGAAGCTGAAGTTAGTGAGAAGAAAGATAGGGTTAC
genomic: TTGCAAGAAAGGTTGGCCAAGCTTTCTGGTGGTGTTGCTGTCTTGAA-Ggtctgtatca ... ccctttgcagATAGGAGGAGCTAGTGAAGCTGAAGTTAGTGAGAAGAAAGATAGGGTTAC
ggggaatgttatctagatatatataaaaatggtggaaaattgcttccctttgcagATAGGAGGAGCTAGTGAAGCTGAAGTTAGTGAGAAGAAAGATAGGGTTACAGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATTGTACCAG
ttgcttccctttgc CT-rich tract
atgttatctagatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtatcaatttacaaatccccaacattactgtctaggcttgttgaggctctaaactcaggagctactgtactggtactcagattcatggggaatgttatctagatatatataaaaatggtggaaaattgcttccctttgcagATAGGAGGAGCTAGTGAAGCTGAAGTTAGTGAGAAGAAAGATAGGGTTACAGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATTGTACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA