Sequence
atgc intronic sequence ATGC exonic sequencegtataaggattcttctctatgttttatctggactttcctgtgtgtgtgcatgtgcatatttttatactgtatgtacattttttggttctagtatttagatttctttttcctcttgctttctatgcagGGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGATTATATTTTACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA20G28970.1 (Glycine max), 3'ss of exon 16
---gtataaggattcttctctatgttttatctggactttcctg--tgtgtgtgcatgtgc-atatttttatactgtatgtacattttttggttctagtatttagatttctttttcctcttgctttctatgcagGGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGATTATATTTTACAG
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gtactaataatatcttttactattttaattctgaatattaattgttctaggttgttgtgtgatgagtttcaattatat-tacattgt---attttagtttataattttcatgtgcc-----ctttttgtgcagAGATTTACTGGTTTCCTTTAGAAAGGCAACAGGACAAAAGCCACTACGAATTATATTTTACAG
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA02G00510.1 (Glycine max), 3'ss of exon 15
---gtataaggattcttctctatgttttatctggactttcctgt-gtgtgtgcatgtgc-atatttttatactgtatgtacattttttggtt----ctagtatttagatttctttttcctcttgctttctatgcagGGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGATTATATTTTACAG
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gtattacaagaaatatgacctccttttt-tctaattctcaatgttgtttttggttgtgggacgatgggattttgacaatacaattttcactttcctcctgtatctaaatattgttttttgtatccttttt-tgcagAGACTTGTTGATTTCCTTTAGAAAGGCAACAGGGCAGAAGCCTCTAAGAATTATCTTTTATAG
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA10G00530.1 (Glycine max), 3'ss of exon 7
---gtataaggattct---tctctatgtttta--tctggac-tttcctgtgtgtgtgc-atgtgcatatttttatactgta-tgtacattttttggttctagtatttagatttctttttcctcttgctttctatgcagGGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGATTATATTTTACAG
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gtaatacaagaaatatgaactcctattttctaattcttaatgttgtttttggttgtgagatgatgggattttcacaatataattttcattttcc---tcctgtatctaaatattgttttttgt---ccttttttgcagAGATTTGTTGATTTCCTTTAGAAAGGCAACCGGTCAGAAGCCTCTAAGGATTATATTTTATAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37188618|gb|CF607967.1|CF607967EST: AAGACATGGCATGATCCTGTTCGTGGCACAGTTAGTGGTGGCATGATTCG GGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGAT
genomic: AAGACATGGCATGATCCTGTTCGTGGCACAGTTAGTGGTGGCATGATTCGgtataaggat ... ttctatgcagGGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtacattttttggttctagtatttagatttctttttcctcttgctttctatgcagGGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGATTATATTTTACAG
tttagatttctttttc CT-rich tract
tatttagatttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtataaggattcttctctatgttttatctggactttcctgtgtgtgtgcatgtgcatatttttatactgtatgtacattttttggttctagtatttagatttctttttcctcttgctttctatgcagGGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGATTATATTTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC