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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgaggatataaatttatatttgcagtttttcagaagcattagctgatattgttttatgttctgttacagGTTGAAGTATTAATCAAGGAAAAGAATGAAGTATCCATAAGTCGGCGGTCTACCCTGAATAAAGGTTCAGAACTTTTTCTGTCTGAGAATCGTTCATCAT

Basic information

species Vitis vinifera
transcript Vv05s0020g01740.t01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32250155|gb|CD715974.1|CD715974
EST:     AGGATTTCCTTGTTGCATTTGGGGGAACCAAAAAGGAGCCATCAAATGAG                         GTTGAAGTATTAATCAAGGAAAAGAATGAAGTATCCATAAGTCGGCGGTCT
genomic: AGGATTTCCTTGTTGCATTTGGGGGAACCAAAAAGGAGCCATCAAATGAGgttgaggata ... tctgttacagGTTGAAGTATTAATCAAGGAAAAGAATGAAGTATCCATAAGTCGGCGGTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatttgcagtttttcagaagcattagctgatattgttttatgttctgttacagGTTGAAGTATTAATCAAGGAAAAGAATGAAGTATCCATAAGTCGGCGGTCTACCCTGAATAAAGGTTCAGAACTTTTTCTGTCTGAGAATCGTTCATCAT
                          agctgat  putative branch site (score: 4)
                                            ttctgtt  putative PPT
                               atattgttttatgtt  TA-rich tract