Sequence
atgc intronic sequence ATGC exonic sequencegtttgtgttgtactcagtttaaattaggactattcatttgttttcatgaagtttttaagccataattttcattttatgatcagGATTTCCAAGACGGTGTTGGGGCTCCTATATTTCTCCTGACATCTCAAGTTGGTGGTTTGGGCCTCACTTTAACAAAAGCAGACCGTGTGATTGTGGTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0044g01680.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA05G32740.1 (Glycine max), 3'ss of exon 12
gtttgtgttgtactcagtttaaattaggactattcatttgttttcatgaagtttttaagcc-----ataattttcattttatgatcagGATTTCCAAGACGGTGTTGGGGCTCCTATATTTCTCCTGACATCTCAAGTTGGTGGTTTGGGCCTCACTTTAACAAAAGCAGACCGTGTGATTGTGGTTG
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gtaagtgctttgcacagtt-aacttagtagcctttgca-attctctgaatgcttttctgtcttatgacacctgctgttctgatttcagGATTTTCAAGAAGGTTTTGGAGCTCCTATATTTCTCTTGACATCTCAGGTTGGTGGTTTAGGACTAACACTTACAAGAGCAGATCGTGTGATTGTAGTTG
upper sequence: Vv04s0044g01680.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G00400.1 (Glycine max), 3'ss of exon 14
gtttgtgttgtactcagtttaaattaggactattcatttgttttcatgaagtttttaagccataattttcattttatgatcagGATTTCCAAGACGGTGTTGGGGCTCCTATATTTCTCCTGACATCTCAAGTTGGTGGTTTGGGCCTCACTTTAACAAAAGCAGACCGTGTGATTGTGGTTG
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gtaagtgctttgcatggtt-aacttagtaaccttcgtaaaatgtttttctgtctt---atgacacctgctgttttgatttcagGATTTCCAAGAAGGTTTTGGAGCTCCTATATTTCTCTTGACATCTCAGGTTGGCGGTTTAGGACTAACACTTACAAGAGCAGATCGTGTGATTGTAGTTG
upper sequence: Vv04s0044g01680.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT5G63950.1 (Arabidopsis thaliana), 3'ss of exon 14
-----------------------gtttgtgttgtactcagtttaaattaggactattcatttgttttcatg--aagtttttaag----ccata--attttcattttatgatcagGATTTCCAAGACGGTGTTGGGGCTCCTATATTTCTCCTGACATCTCAAGTTGGTGGTTTGGGCCTCACTTTAACAAAAGCAGACCGTGTGATTGTGGTTG
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gtgggtttttctcttccccaacacattacatttcattttttctgagttcgttattttttctagtcttcatgctaaattgctaacagttctataaaacaataatattctg--tagGAATTTCAAGAAGGTCATGTGGCTCCTATATTTCTCTTGACTTCTCAAGTTGGTGGTCTCGGCCTTACTCTGACTAAGGCAGACCGTGTGATTGTGGTGG
upper sequence: Vv04s0044g01680.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: EFJ25732 (Selaginella moellendorffii), 3'ss of exon 12
gtttgtgttgtactcagtttaaattaggactattcatttgttttcatgaagtttttaagccataattttcattttatgatcagGATTTCCAA---GACGGTGTTGGGGCTCCTATATTTCTCCTGACATCTCAAGTTGGTGGTTTGGGCCTCACTTTAACAAAAGCAGACCGTGTGATTGTGGTTG
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--------------------------------gtgagccacggttatggatttacttgac--taacttt-attctattg-cagGATTTCCAAACTGATGGCTGTACAGTTTCTATATTTCTGCTGACATCTCAAGTTGGAGGATTGGGACTTACGTTGACAGCTGCAGATAGAGTTGTCATTG--- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actattcatttgttttcatgaagtttttaagccataattttcattttatgatcagGATTTCCAAGACGGTGTTGGGGCTCCTATATTTCTCCTGACATCTCAAGTTGGTGGTTTGGGCCTCACTTTAACAAAAGCAGACCGTGTGATTGTGGTTG
ttttcatttt CT-rich tract
ataattttcattttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgtgttgtactcagtttaaattaggactattcatttgttttcatgaagtttttaagccataattttcattttatgatcagGATTTCCAAGACGGTGTTGGGGCTCCTATATTTCTCCTGACATCTCAAGTTGGTGGTTTGGGCCTCACTTTAACAAAAGCAGACCGTGTGATTGTGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG