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gtaagcgatgaatgaagggttcttcctcttgttattttatatgttctttgatgcgaactaatatacctttttttttattgcactatattgagcagGACCCCATTTAATTAGTTTCAGAACGCCTGCTCGGCATGTGCCATTACAAGCTTCAATGACTGTAACAGATG
species | Vitis vinifera |
transcript | Vv04s0023g01300.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TCGACATGGAACTGGTCATGGAATTGGATCTTACCTTAATGTTCATGAAG GACCCCATTTAATTAGTTTCAGAACACCTGCTCGGCATGTGCCATTACAAGEST: gi|29782363|gb|CB347609.2|CB347609
genomic: TCGACATGGAACTGGTCATGGAATTGGATCTTACCTTAATGTTCATGAAGgtaagcgatg ... tattgagcagGACCCCATTTAATTAGTTTCAGAACGCCTGCTCGGCATGTGCCATTACAAG
EST: TCGACATGGAACTGGTCATGGAATTGGATCTTACCTTAATGTTCATGAAG GACCCCATTTAATTAGTTTCAGAACACCTGCTCGGCATGTGCCATTACAAGEST: gi|110694334|gb|EE071348.1|EE071348
genomic: TCGACATGGAACTGGTCATGGAATTGGATCTTACCTTAATGTTCATGAAGgtaagcgatg ... tattgagcagGACCCCATTTAATTAGTTTCAGAACGCCTGCTCGGCATGTGCCATTACAAG
EST: TCGACATGGAACTGGTCATGGAATTGGATCTTACCTTAATGTTCATGAAG GACCCCATTTAATTAGTTTCAGAACACCTGCTCGGCATGTGCCATTACCAGEST: gi|110700420|gb|EE078440.1|EE078440
genomic: TCGACATGGAACTGGTCATGGAATTGGATCTTACCTTAATGTTCATGAAGgtaagcgatg ... tattgagcagGACCCCATTTAATTAGTTTCAGAACGCCTGCTCGGCATGTGCCATTACAAG
EST: TCGACATGGAACTGGTCATGGAATTGGATCTTACCTTAATGTTCATGAAG GACCCCATTTAATTAGTTTCAGAACGCCTGCTCGGCATGTGCCATTACAAGEST: gi|30299030|gb|CB975824.1|CB975824
genomic: TCGACATGGAACTGGTCATGGAATTGGATCTTACCTTAATGTTCATGAAGgtaagcgatg ... tattgagcagGACCCCATTTAATTAGTTTCAGAACGCCTGCTCGGCATGTGCCATTACAAG
EST: TCGACATGGAACTGGTCATGGGATTGGATCTTACCTTAATGTTCATGAAG GACCCCATTTAATTAGTTTCAGAACACCTGCTCGGCATGTGCCATTACAAGEST: gi|110379199|gb|EC944379.1|EC944379
genomic: TCGACATGGAACTGGTCATGGAATTGGATCTTACCTTAATGTTCATGAAGgtaagcgatg ... tattgagcagGACCCCATTTAATTAGTTTCAGAACGCCTGCTCGGCATGTGCCATTACAAG
EST: TCGACATGGAACTGGTCATGGAATTGGATCTTACCTTAATGTTCATGAAG GACCCCATTTAATTAGTTTCAGAACACCTGCTCGGCATGTGCCATTACAAGEST: gi|29782317|gb|CB347526.2|CB347526
genomic: TCGACATGGAACTGGTCATGGAATTGGATCTTACCTTAATGTTCATGAAGgtaagcgatg ... tattgagcagGACCCCATTTAATTAGTTTCAGAACGCCTGCTCGGCATGTGCCATTACAAG
EST: TCGACATGGAACTGGTCATGGAATTGGATCTTACCTTAATGTTCATGAAG GACCCCATTTAATTAGTTTCAGAACACCTGCTCGGCATGTGCCATTACAAG
genomic: TCGACATGGAACTGGTCATGGAATTGGATCTTACCTTAATGTTCATGAAGgtaagcgatg ... tattgagcagGACCCCATTTAATTAGTTTCAGAACGCCTGCTCGGCATGTGCCATTACAAG
atgttctttgatgcgaactaatatacctttttttttattgcactatattgagcagGACCCCATTTAATTAGTTTCAGAACGCCTGCTCGGCATGTGCCATTACAAGCTTCAATGACTGTAACAGATG
aactaat putative branch site (score: 2)
aactaatatacctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgatgaatgaagggttcttcctcttgttattttatatgttctttgatgcgaactaatatacctttttttttattgcactatattgagcagGACCCCATTTAATTAGTTTCAGAACGCCTGCTCGGCATGTGCCATTACAAGCTTCAATGACTGTAACAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG