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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggattttctttctcagaaatcttacttcaaatttgtggtgtgatatacttttagtaacgtatctattagtggattatgaatctatgcttatttggctgtaatgaccagATTTCGAGGAGGCCTAGGATTAGTACAGGCTATCGGATTATCAACATGATGACAGAACCTTGTAGGCTAGTCCGTCGATGTGAAGTGACAGCAATTCTTA

Basic information

species Vitis vinifera
transcript Vv04s0023g01040.t01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110368327|gb|EC932299.1|EC932299
EST:     TGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAGACTGTTAGCACT                         ATTTCGAGGAGGCCTAGGATTAGTACAGGCTATCGGATTATCAACATGATG
genomic: TGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAGACTGTTAGCACTgtaggatttt ... taatgaccagATTTCGAGGAGGCCTAGGATTAGTACAGGCTATCGGATTATCAACATGATG
EST: gi|110715090|gb|EE092739.1|EE092739
EST:     TGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAGACTGTTAGCACT                         ATTTCGAGGAGGCCTAGGATTAGTACAGGCTATCGGATTATCAACATGATG
genomic: TGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAGACTGTTAGCACTgtaggatttt ... taatgaccagATTTCGAGGAGGCCTAGGATTAGTACAGGCTATCGGATTATCAACATGATG
EST: gi|110397911|gb|EC963898.1|EC963898
EST:     TGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAGACTGTTAGCACT                         ATTTCGAGGAGGCCTAGGATTAGTACAGGCTATCGGATTATCAACATGATG
genomic: TGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAGACTGTTAGCACTgtaggatttt ... taatgaccagATTTCGAGGAGGCCTAGGATTAGTACAGGCTATCGGATTATCAACATGATG
EST: gi|30137737|gb|CB923075.1|CB923075
EST:     TGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAGACTGTTAGCACT                         ATTTCGAGGAGGCCTAGGATTAGTACAGGCTATCGGATTATCAACATGATG
genomic: TGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAGACTGTTAGCACTgtaggatttt ... taatgaccagATTTCGAGGAGGCCTAGGATTAGTACAGGCTATCGGATTATCAACATGATG
EST: gi|110731744|gb|EE106423.1|EE106423
EST:     TGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAGACTGTTAGCACT                         ATTTCGAGGAGGCCTAGGATTAGTACAGGCTATCGGATTATCAACATGATG
genomic: TGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAGACTGTTAGCACTgtaggatttt ... taatgaccagATTTCGAGGAGGCCTAGGATTAGTACAGGCTATCGGATTATCAACATGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaacgtatctattagtggattatgaatctatgcttatttggctgtaatgaccagATTTCGAGGAGGCCTAGGATTAGTACAGGCTATCGGATTATCAACATGATGACAGAACCTTGTAGGCTAGTCCGTCGATGTGAAGTGACAGCAATTCTTA
 tagtaac  putative branch site (score: 1)
      tatctatta  TA-rich tract