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...caatcgtattgttggagctctacttcctgtttcatgatggaagggggtaattatcagcttcagtatgtttcaatgatatttctttatgtgattattgcagTGAGCCACGCAAGCGGCCGTCGTTCTCACAGCTCATGTCTCGTCTCAAGCATCTTCAGCATCTGGTGTTTGAAAGAGCAAGCTCTTCAAGACAAGCACAA
species | Vitis vinifera |
transcript | Vv04s0008g01310.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GAAGAGGTTGATCCAATGGTTGCACAGATAATAAATGATTGTTGGGAAGT TGAGCCACGCAAGCGGCCGTCGTTCTCACAGCTCATGTCTCGTCTCAAGCAEST: gi|110400430|gb|EC966993.1|EC966993
genomic: GAAGAGGTTGATCCAATGGTTGCACAGATAATAAATGATTGTTGGGAAGTgtaagttctc ... attattgcagTGAGCCACGCAAGCGGCCGTCGTTCTCACAGCTCATGTCTCGTCTCAAGCA
EST: GAAGAGGTTGATCCAATGGTTGCACAGATAATAAATGATTGTTGGGAAGT TGAGCCACGCAAGCGGCCGTCGTTCTCACAGCTCATGTCTCGTCTCAAGCAEST: gi|34364117|gb|CF405702.1|CF405702
genomic: GAAGAGGTTGATCCAATGGTTGCACAGATAATAAATGATTGTTGGGAAGTgtaagttctc ... attattgcagTGAGCCACGCAAGCGGCCGTCGTTCTCACAGCTCATGTCTCGTCTCAAGCA
EST: GAAGAGGTTGATCCAATGGTTGCACAGATAATAAATGATTGTTGGGAAGT TGAGCCACGCAAGCGGCCGTCGTTCTCACAGCTCATGTCTCGTCTCAAGCAEST: gi|110420400|gb|EC986672.1|EC986672
genomic: GAAGAGGTTGATCCAATGGTTGCACAGATAATAAATGATTGTTGGGAAGTgtaagttctc ... attattgcagTGAGCCACGCAAGCGGCCGTCGTTCTCACAGCTCATGTCTCGTCTCAAGCA
EST: GAAGAGGTTGATCCAATGGTTGCACAGATAATAAATGATTGTTGGGAAGT TGAGCCACGCAAGCGGCCGTCGTTCTCACAGCTCATGTCTCGTCTCAAGCAEST: gi|33402249|gb|CF207876.1|CF207876
genomic: GAAGAGGTTGATCCAATGGTTGCACAGATAATAAATGATTGTTGGGAAGTgtaagttctc ... attattgcagTGAGCCACGCAAGCGGCCGTCGTTCTCACAGCTCATGTCTCGTCTCAAGCA
EST: GAAGAGGTTGATCCAATGGTTGCACAGATAATAAATGATTGTTGGGAAGT TGAGCCACGCAAGCGGCCGTCGTTCTCACAGCTCATGTCTCGTCTCAAGCA
genomic: GAAGAGGTTGATCCAATGGTTGCACAGATAATAAATGATTGTTGGGAAGTgtaagttctc ... attattgcagTGAGCCACGCAAGCGGCCGTCGTTCTCACAGCTCATGTCTCGTCTCAAGCA
ggtaattatcagcttcagtatgtttcaatgatatttctttatgtgattattgcagTGAGCCACGCAAGCGGCCGTCGTTCTCACAGCTCATGTCTCGTCTCAAGCATCTTCAGCATCTGGTGTTTGAAAGAGCAAGCTCTTCAAGACAAGCACAA
atatttctttatgtga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatcgtattgttggagctctacttcctgtttcatgatggaagggggtaattatcagcttcagtatgtttcaatgatatttctttatgtgattattgcagTGAGCCACGCAAGCGGCCGTCGTTCTCACAGCTCATGTCTCGTCTCAAGCATCTTCAGCATCTGGTGTTTGAAAGAGCAAGCTCTTCAAGACAAGCACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - tggagct
- - - - - - - - - - - -ttcctgt
- - - - - - - - - - - - - - - - catgatg
- - - - - - - - - - - - - - - - - - - - - gggggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - cagcttc