1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gtggaaaccaaaattttgaaccttgccatgttcatctacaagggttgtagttgtgcataacctcgcttctgcataactgatctacaccggtttattgcagGTAACTTTGGCACGGAATCCGTATCTTGAAGCCACTGCAGTGGGTTAAAGAGCTTGCAAATGGAAATCCAGTATTGTAGAACATTGTTGGGACATGTATT
species | Vitis vinifera |
transcript | Vv03s0063g01110.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CAGGACTTCTCTACCAGCCATTGTTTCCATAAGATATTCTACCTTAAAGG GTAACTTTGGCACGGAATCCGTATCTTGAAGCCACTGCAGTGG-TTAAAGAEST: gi|110390116|gb|EC955007.1|EC955007
genomic: CAGGACTTCTCTACCAGCCATTGTTTCCATAAGATACTCTACCTTAAAGGgtaagcattc ... tttattgcagGTAACTTTGGCACGGAATCCGTATCTTGAAGCCACTGCAGTGGGTTAAAGA
EST: CAGGACTTCTCTACCAGCCATTGTTTCCATAAGATATTCTACCTTAAAGG GTAACTTTGGCACGGAATCCGTATCTTGAAGCCACTGCAGTGG-TTAAAGAEST: gi|30330207|gb|CD013469.1|CD013469
genomic: CAGGACTTCTCTACCAGCCATTGTTTCCATAAGATACTCTACCTTAAAGGgtaagcattc ... tttattgcagGTAACTTTGGCACGGAATCCGTATCTTGAAGCCACTGCAGTGGGTTAAAGA
EST: CAGGACTTCTCTACCAGCCATTGTTTCCATAAGATATTCTACCTTAAAGG GTAACTTTGGCACGGAATCCGTATCTTGAAGCCACTGCAGTGG-TTAAAGAEST: gi|30134557|gb|CB919895.1|CB919895
genomic: CAGGACTTCTCTACCAGCCATTGTTTCCATAAGATACTCTACCTTAAAGGgtaagcattc ... tttattgcagGTAACTTTGGCACGGAATCCGTATCTTGAAGCCACTGCAGTGGGTTAAAGA
EST: CAGGACTTCTCTACCAGCCATTGTTTCCATAAGATACTCTACCTTAAAGG GTAACTTTGGCACGGAATCTGTATCTTGAAGCCACTGCAGTGGGTTAAAGAEST: gi|87584416|gb|DY473601.1|DY473601
genomic: CAGGACTTCTCTACCAGCCATTGTTTCCATAAGATACTCTACCTTAAAGGgtaagcattc ... tttattgcagGTAACTTTGGCACGGAATCCGTATCTTGAAGCCACTGCAGTGGGTTAAAGA
EST: CAGGACTTCTCTACCAGCCATTGTTTCCATAAGATATTCTACCTTAAAGG GTAACTTTGGCACGGAATCCGTATCTTGAAGCCACTGCAGTGG-TTAAAGAEST: gi|30329402|gb|CD012664.1|CD012664
genomic: CAGGACTTCTCTACCAGCCATTGTTTCCATAAGATACTCTACCTTAAAGGgtaagcattc ... tttattgcagGTAACTTTGGCACGGAATCCGTATCTTGAAGCCACTGCAGTGGGTTAAAGA
EST: CAGGACTTCTCTACCAGCCATTGTTTCCATAAGATATTCTACCTTAAAGG GTAACTTTGGCACGGAATCCGTATCTTGAAGCCACTGCAGTGG-TTAAAGAEST: gi|30320747|gb|CD004009.1|CD004009
genomic: CAGGACTTCTCTACCAGCCATTGTTTCCATAAGATACTCTACCTTAAAGGgtaagcattc ... tttattgcagGTAACTTTGGCACGGAATCCGTATCTTGAAGCCACTGCAGTGGGTTAAAGA
EST: CAGGACTTCTCTACCAGCCATTGTTTCCATAAGATACTCTACCTTAAAGG GTAACTTTGGCACGGAATCTGTATCTTGAAGCCACTGCAGTGGGTTAAAGA
genomic: CAGGACTTCTCTACCAGCCATTGTTTCCATAAGATACTCTACCTTAAAGGgtaagcattc ... tttattgcagGTAACTTTGGCACGGAATCCGTATCTTGAAGCCACTGCAGTGGGTTAAAGA
tgtagttgtgcataacctcgcttctgcataactgatctacaccggtttattgcagGTAACTTTGGCACGGAATCCGTATCTTGAAGCCACTGCAGTGGGTTAAAGAGCTTGCAAATGGAAATCCAGTATTGTAGAACATTGTTGGGACATGTATT
aactgat putative branch site (score: 3)
tttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggaaaccaaaattttgaaccttgccatgttcatctacaagggttgtagttgtgcataacctcgcttctgcataactgatctacaccggtttattgcagGTAACTTTGGCACGGAATCCGTATCTTGAAGCCACTGCAGTGGGTTAAAGAGCTTGCAAATGGAAATCCAGTATTGTAGAACATTGTTGGGACATGTATT
- - aaaccaa
- - - - - - - - - - ccttgcc
- - - - - - - - - - - - - - - - catctac
- - - - - - - - - - - - - - - - - - - - -gggttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - gtgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacacc