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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtatttgatgttcgggctgcgttcaccttctctttgagcacgtcccaactaatgcgattcttcttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG

Basic information

species Vitis vinifera
transcript Vv03s0038g02760.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 13
gtag-tatttgatgttcgggc---tgcgttcaccttctctttg---agcacgtccc----aactaat--gcgattcttcttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG
|||   |||||   | |   |   ||  ||||  |   || ||   |  || | |     | || ||    | |  ||| | || ||||| ||||| || |||||||||||||||||||| || || |||||||| || || ||||| || || || |||||||||||||||
gtaaacatttggactccatacatttgatttcatttaagctatggcaaatacttacagtggagctcatttatgctgtttcatgttacagCTTTATGCCAACTATGCAATTGGGAAGGATGTCCAGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 12
gtag-tatttgatgttcg--ggctgcgttcaccttctctttgagcacgtcccaactaatgcgattcttcttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG
|||  ||||    || |   ||||  |||  |   |    || | | |    |   |   | | | || |   ||||||| ||||| || ||||| ||||| ||||||||||| || ||||| ||||| |||||||| || ||||| || ||||||||||||
gtacctattatgagtccataggctttgttttcagacatgatgtgtaagatgaattgacatctactgttttctgttcagCTTTATGCCAACTATGCTATTGGAAAGGATGTTCAGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G181151_T01 (Zea mays), 3'ss of exon 13
-------------------gtagtatttgatgttcgggc---tgcgttcaccttctctttgagcacgtccc--------aacta--atgcgattcttcttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG
                   ||  | ||||||    | |    |    |   || | |||    || |            || |   ||  | |  ||  |||||||||| ||||| || || |||||||| ||||||||||| || ||||| || || |||||||| || ||||| || ||||||||||||
gtacatactatgagtccatgttatttttgataagggagtccatagtctttgctacccttcagacatgatgtgcaagatgaattgacatctgctgttttctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA09G38110.1 (Glycine max), 3'ss of exon 13
gtagtatttgatgttcgggctgcgttcaccttctctttgagcacgtcccaactaat--gcgattcttcttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG
||    |||    |     || | ||    || | | ||   |    ||| || ||  | | ||  | |  ||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| ||||||||||||||||| |||||||| |||
gtctggttttgcttgtttactacattgctattttttctgtttataagccatcttattggtgttttgtttcttttcagCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTCGGAGAAGAAGCACTTTCATCTGAGGACCTG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA20G24070.1 (Glycine max), 3'ss of exon 14
-------gtagtatttgat--gttcgggctgcgttcaccttctctttgagcacgtcccaactaatgcgattctt-cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG
        |  | |||  |   |    | |   ||    ||          ||   |  | | |||  ||| ||  || ||||||||||||||||||||||| ||||| |||||||| || ||||||||||| ||||||||||||||||||||||| |||||||| |||
gtctctgatcatgttttgttcatcacagttatttttctgtttatcacacagactatctcattcatgttatttttatttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 13
----gtagtatttgatgttcgggctgcgttcaccttctctttgagcacgtcccaactaatgcgattcttcttctttca-gCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG-
    ||  |   || |   |    |||  |    |||| |||    ||   |  | |  ||  ||| |  |||||| | |||||||||||||||||| ||||| |||||||| || ||||||||||| ||||| ||||||||||||||||| |||||||| ||| 
tctggttttgcctgcttaccacattgctatt-ttttctgtttataaaccatctcattggtgttattttgtttcttttaagcTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCCGTGGTCGGAGAAGAAGCACTTTCATCTGAGGACCTGG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA10G42940.3 (Glycine max), 3'ss of exon 13
----gtagtatt-tgatgttcgggctgcgttcaccttctctttgagcacgt--------cccaactaatgcgattctt-cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG
     |  | || |  |||||         | |  ||    || | ||| |         |  | | |||  ||| ||  || ||||||||||| ||||||||||| || || |||||||| || ||||||||||| ||||||||||||||||||||||| |||||||| |||
gtctctgatcttgttttgttcatcacatagttatttttctgttcatcacatagactatatctcattcatgttatttttatttttttcagCTCTACGCAAATTATGCTATCGGAAAGGATGTGCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 3'ss of exon 14
--------------------------------------gtagtatttgatgttcgggctgcgttcaccttctctttgagcacgt-cccaacta---atgcgattcttcttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG
                                        ||  ||   | |    | |    |   |  || ||| |||  |  |  ||||    ||    || || |  |||||| | ||||| ||||| || ||||| ||||| || || || |||||||| ||||||||||||||||| |||||||| |||||||||
gtaagactttatttcttgtccattaccagcattgcagaaaagctttgtttatgtaagttttacttgtcaacttttttagcctgagcttaacttgttattatgtttttgtgatttcagTTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGTGGTTGGAGAAGAAGCTCTTTCTTCCGAGGATCTG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 3'ss of exon 13
-------------------------gtagtatttgatgttcgggctgcgttcaccttctctttgagcacgtcccaactaatgcgattctt-cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG
                           |||   | |||        |   |||        | | | || |  || ||||    ||  || | | |  ||| | ||||| |||||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||  | ||||| || ||||||
tttttgtttcaagcatgcaacttctcaagtgcctaatgcctattacgaaatcaggaatggatagggaac-ttacacctaacatcatgtttgcctgtcccagTTGTATGCTAATTATGCCATTGGAAAGGATGTTCAAGCAATGAAGGCTGTCGTTGGAGAGGAAGCTTTGTCTTCAGAAGATCTG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 3'ss of exon 12
------------------gtagtatttgatgttcgggctgcgttcacct--tctctttgagc----acgtcccaactaatgcgat-tcttcttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG
                  || |   |  |  | |    |    | |     |||  |||||     || |      |||   | | ||| |   || ||| | || ||||| ||||| ||||| |||||||| ||||| ||||| |||||||| |||||||||||  | ||||| |||||||||
cacatgagagcatcatttgtggccatcaacttccccatttttctgatgaagtctgcttgagtcaagactttgggtttaacatggtgtctacccattgcagTTGTACGCAAACTATGCGATTGGAAAGGATGTACAAGCCATGAAGGCTGTGGTGGGAGAAGAAGCCTTGTCTTCAGAGGATCTG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 3'ss of exon 12
-------------------gtagtatttgatgttcgg-gctgc--gttcaccttct--ctttgagcacgtcccaactaatgcgattcttcttcttt-cagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG
                     | | ||| ||||||   | ||    || ||  | |  |  || | |  |   |  | |   |    |  ||| || ||| | || ||||||||||| || ||||||||||| ||||| ||||| |||||||| ||||| |||||  | ||||| || ||||||
tttatttcaagtaacttcctcaatttttaatgttcaatgttgataattaactctgtgacaatggggagtttggatttgacaagtcgttgattcattgcagTTGTACGCAAATTATGCTATCGGGAAGGATGTGCAAGCCATGAAGGCTGTGGTGGGAGAGGAAGCCTTGTCTTCAGAAGATCTG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: EFJ13375 (Selaginella moellendorffii), 3'ss of exon 12
gtagtatttgatgttcgggctgcgttcaccttctctttgagcac-gtcccaactaatgcgattc-ttcttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG
                     | |  |   |     |  | ||   | ||   |||  |  |    |  | || |||||||||||||| ||||| ||||| || || |||||||| ||||||||||| || ||||||||||| || || ||||| ||||||
---------------------gtgagcgattgtgtctacatcattatgccgtttaacactgtctactggttttgcagCTCTATGCAAACTATGCCATTGGCAAAGACGTTCAAGCGATGAAAGCTGTCGTGGGAGAAGAAGCGCTGTCATCTGAAGATCTG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: EFJ11911 (Selaginella moellendorffii), 3'ss of exon 12
gtagtatttgatgttcgggctgcgttcaccttctctttgagcacgtcccaactaatgcgattcttcttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG
           ||  ||   || ||  || |   | ||  || |||   |   ||||    |  |  | || ||||| |||||||| ||||| ||||| || || |||||||| ||||||||||| || ||||||||||| || || ||||| ||||||
----------gtgagcga-ttgtgtctacat---cattatgc-cgtttaa--caatgt--ctactggttttgcagCTTTATGCAAACTATGCCATTGGCAAAGACGTTCAAGCGATGAAAGCTGTCGTGGGAGAAGAAGCGCTGTCATCTGAAGATCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110375541|gb|EC940537.1|EC940537
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|110362645|gb|EC926192.1|EC926192
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|110357509|gb|EC921103.1|EC921103
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|110720101|gb|EE095728.1|EE095728
EST:     CCATTGGTGAGGGGATGACCCGTANGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|110719306|gb|EE097131.1|EE097131
EST:     CATTGGTGAGGGGATGACCCGNTAGG-ATCATGCCAATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CATTGGTGAGGGGATGACCCG-TAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|30325437|gb|CD008699.1|CD008699
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|22013013|gb|BQ798047.1|BQ798047
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|110712807|gb|EE088186.1|EE088186
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|30251466|gb|CB969199.1|CB969199
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|30305860|gb|CB982654.1|CB982654
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|110690712|gb|EE068109.1|EE068109
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|33402634|gb|CF208261.1|CF208261
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|110723346|gb|EE100552.1|EE100552
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|34542515|gb|CF510747.1|CF510747
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCAATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|349813104|gb|FQ411344.1|FQ411344
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|32268554|gb|CD717713.1|CD717713
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|110414446|gb|EC980278.1|EC980278
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|156737783|gb|EV241904.1|EV241904
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCCATCAG                         CTCTATGCAA-TTATGCAATTGGGGAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|110376681|gb|EC941748.1|EC941748
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|110705729|gb|EE082911.1|EE082911
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|110364580|gb|EC927938.1|EC927938
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|30323729|gb|CD006991.1|CD006991
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|30320892|gb|CD004154.1|CD004154
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|34542425|gb|CF510657.1|CF510657
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCAATGTATCGATTCAG                         CTCTATGCAAATTATGCAATTGGGGAAGGATGTTCAAGCAATGAAAGCTGT
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGG-AAGGATGTTCAAGCAATGAAAGCTGT
EST: gi|27583834|gb|CB006529.1|CB006529
EST:     GAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: GAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|30251540|gb|CB969273.1|CB969273
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|110687127|gb|EE064266.1|EE064266
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|30305803|gb|CB982597.1|CB982597
EST:     ATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAACGCTGTG
genomic: ATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|30324538|gb|CD007800.1|CD007800
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|30324380|gb|CD007642.1|CD007642
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG                         CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTG
EST: gi|110424996|gb|EC991371.1|EC991371
EST:     CCATTGGTGAGGGGATGACCCGTAGGGATCATGCGGATGTATCCCATCAG                         CTCTATGCAAATTATGCAAT
genomic: CCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAGgtagtatttg ... cttctttcagCTCTATGCAAATTATGCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcgttcaccttctctttgagcacgtcccaactaatgcgattcttcttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG
                             aactaat  putative branch site (score: 2)
                                     cgattcttcttctttc  CT-rich tract
                             aactaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagtatttgatgttcgggctgcgttcaccttctctttgagcacgtcccaactaatgcgattcttcttctttcagCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT