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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaatgcttagcatttcttggttgttttggttttttgccttttgttttctggcttattgttttttttttcttttcctcattagGAAATATTAGGGTGTATTGTCGGATAAGGCCATTCCTTCCAGGGCAAAGTGAAAAGTATACAACCATAGAATATATTGGTGAGAATGGGGAATTGGTCAT

Basic information

species Vitis vinifera
transcript Vv02s0025g03480.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G01800.1 (Glycine max), 3'ss of exon 12
---------gtacaatgctta-----gcatttcttggttgttttggttt--tttgccttttgttttctggcttattgttttttttttcttttcctcattagGAAATATTAGGGTGTATTGTCGGATAAGGCCATTCCTTCCAGGGCAAAGTGAAAAGTATACAACCATAGAATATATTGGTGAGAATGGGGAATTGGTCAT
          ||   ||||||       |||      | || || | ||  ||       || ||| |  ||| || || || |   |  ||  | | |||| ||||| ||||| |||||||| || |||||||| ||||||||||||||| |||   ||||||| || || | | |||||||  |||| ||| || |  |
gtatgcattatatggtgcttatatgaagattgtgaactggtgtttgcttgattgatgacctgatttttttcttctttttattctaaaccatttattaatagGTAATATAAGGGTATATTGTCGAATTAGGCCATTTCTTCCAGGGCAAAGTCAAAGCCATACAACAATTGAGTTTGTTGGTGATGATGGAGAACTGATTGT

upper sequence: Vv02s0025g03480.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT5G41310.1 (Arabidopsis thaliana), 3'ss of exon 10
-------------gtacaatgcttagcatttcttggttgttttggttttttg-ccttttgttttctggcttat-tgttttttttttcttttcctcattagGAAATATTAGGGTGTATTGTCGGATAAGGCCATTCCTTCCAGGGCAAAGTGAAAAGTATACAACCATAGAATATATTGGTGAGAATGGGGAATTGGTCAT
               ||  | |||    | | |  |   | | | ||||| | |  |  | |||    ||| | |  ||||||||  |  |    |  |||||||||||| || ||||| |||||||| |||||||||| ||| ||||   | ||  | ||| | ||||| || |  ||||||||||| ||| ||||  |
taaaagactgccctaactctacttcatttatttgagccttatagctttttagacggtaagatttgcttcttgtgtacttttttttgttgcttgcaaaaagGAAATATTAGAGTATATTGCCGGATAAGACCATTCCTTCAAGGACAAAACAAGAAACAAACATCAATAGAGTACACAGGTGAGAATGGTGAACTGGTGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttttttgccttttgttttctggcttattgttttttttttcttttcctcattagGAAATATTAGGGTGTATTGTCGGATAAGGCCATTCCTTCCAGGGCAAAGTGAAAAGTATACAACCATAGAATATATTGGTGAGAATGGGGAATTGGTCAT
         ccttttgttttctggc  CT-rich tract
                         ttattgtttttttttt  TA-rich tract