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...agttaatctcagtgcatggatccattgtttgctttatgttctgcacatttgtattaacctgttgggcatcctttgtgtttattgtgcctgcactctcaagCCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCCCTGGTGTTGGGGGAGGGCGTGGGATGGGAGATGCTAATGGCAATGTTCA
species | Vitis vinifera |
transcript | Vv02s0012g00870.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATCATCTTCTACAGGGGACAGTCTGTCTGACCTTGGGATTGGGGACTCAA CCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCCEST: gi|352774158|gb|FQ474681.1|FQ474681
genomic: ATCATCTTCTACAGGGGACAGTCTGTCTGACCTTGGGATTGGGGACTCAAgtaagcttgc ... cactctcaagCCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCC
EST: TACAGGGGACAGTCTGTCTGACTTTGGGATGGGGGACTCAA CCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCCEST: gi|352772791|gb|FQ473829.1|FQ473829
genomic: TACAGGGGACAGTCTGTCTGACCTTGGGATTGGGGACTCAAgtaagcttgc ... cactctcaagCCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCC
EST: ATCATCTTCTACAGGGGACAGTCTGTCTGACCTTGGGATTGGGGACTCAA CCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCCEST: gi|110370048|gb|EC934223.1|EC934223
genomic: ATCATCTTCTACAGGGGACAGTCTGTCTGACCTTGGGATTGGGGACTCAAgtaagcttgc ... cactctcaagCCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCC
EST: ATCATCTTCTACAGGGGACAGTCTGTCTGACCTTGGGATTGGGGACTCAA CCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCCEST: gi|352764156|gb|FQ467726.1|FQ467726
genomic: ATCATCTTCTACAGGGGACAGTCTGTCTGACCTTGGGATTGGGGACTCAAgtaagcttgc ... cactctcaagCCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCC
EST: ATCATCTTCTACAGGGGACAGTCTGTCTGACCTTGGGATTGGGGACTCAA CCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCCEST: gi|110371746|gb|EC935869.1|EC935869
genomic: ATCATCTTCTACAGGGGACAGTCTGTCTGACCTTGGGATTGGGGACTCAAgtaagcttgc ... cactctcaagCCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCC
EST: ATCATCTTCTACAGGGGACAGTCTGTCTGACCTTGGGATTGGGGACTCAA CCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCCEST: gi|110384475|gb|EC948915.1|EC948915
genomic: ATCATCTTCTACAGGGGACAGTCTGTCTGACCTTGGGATTGGGGACTCAAgtaagcttgc ... cactctcaagCCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCC
EST: CTGACCTTGGGATTGGGGACTCAA CCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCC
genomic: CTGACCTTGGGATTGGGGACTCAAgtaagcttgc ... cactctcaagCCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCC
catttgtattaacctgttgggcatcctttgtgtttattgtgcctgcactctcaagCCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCCCTGGTGTTGGGGGAGGGCGTGGGATGGGAGATGCTAATGGCAATGTTCA
tattaac putative branch site (score: 1)
cactctc putative PPT
tgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttaatctcagtgcatggatccattgtttgctttatgttctgcacatttgtattaacctgttgggcatcctttgtgtttattgtgcctgcactctcaagCCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCCCTGGTGTTGGGGGAGGGCGTGGGATGGGAGATGCTAATGGCAATGTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - -gcatgga
- - - - - - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - - - - - - ctgcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcctg