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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtaaagttgtttccatgtttcctaatgcattctggtgctcataactgatgcaatgtataactttttcattcctcatgtcctctaactaacattggcagGCCGCCACTTGACAATGCTTCCAATGGAGCCTAAACTTGGAAAGATGCTTATACTGGGGGCTGTCTTCAATTGCCTAGATCCAATACTAACCATCGTTGC

Basic information

species Vitis vinifera
transcript Vv01s0011g04360.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA09G18490.1 (Glycine max), 3'ss of exon 8
gtgtgtaaagttgtttccatgtttcctaatgcattctggtgctcataactgatgcaatgtataactttttcattcctcatgtcctctaactaacattggcagGCCGCCACTTGACAATGCTTCCAATGGAGCCTAAACTTGGAAAGATGCTTATACTGGGGGCTGTCTTCAATTGCCTAGATCCAATACTAACCATCGTTGC
         |||| ||     ||  |             |||| |    | ||      |||||  | |  |  ||    ||         ||  ||| |||| | | |||||||||||||||| ||||| || |||||||| |||||||||||| | || | | ||||||||||||| ||||| ||| |||| || |||||
---------gttggttgaccattatccggcatgaaaatctgcttactgattattttccttataaagtataaagcccaatagttggtctgtcaa--ttgacagGGCACAACTTGACAATGCTTCCCATGGAACCCAAACTTGGCAAGATGCTTATATTTGGTGTTATCTTCAATTGCCTGGATCCCATATTAACTATTGTTGC

upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA20G25800.1 (Glycine max), 3'ss of exon 16
gtgtgtaaagttgtttccatgtttcctaatgcattctggtgctcataactgatgca-atgtataactttttcattcctcatgtcctctaactaac------attggcagGCCGCCACTTGACAATGCTTCCAATGGAGCCTAAACTTGGAAAGATGCTTATACTGGGGGCTGTCTTCAATTGCCTAGATCCAATACTAACCATCGTTGC
                    |||   | || | |||| || ||   || |   ||  || | |  || ||  | |  | | | | | ||  |         |||| |||| |||  | ||||||||||||| ||||| || |||||||| |||||||| ||| | || ||| | ||||||||||| ||||| ||| ||||  | |||||
--------------------gttggttgatcccttctagtcctggaaaatttggcttatcttttcctcttgaaatgatgaagacttgtatttgggccttcaattgacagGGCGCTGCCTGACAATGCTTCCTATGGAACCCAAACTTGGCAAGATGCTAATATTAGGTGCTATTTTCAATTGCCTGGATCCCATATTAACTGTGGTTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgatgcaatgtataactttttcattcctcatgtcctctaactaacattggcagGCCGCCACTTGACAATGCTTCCAATGGAGCCTAAACTTGGAAAGATGCTTATACTGGGGGCTGTCTTCAATTGCCTAGATCCAATACTAACCATCGTTGC
                                        aactaac  putative branch site (score: 1)
        aatgtataacttttt  TA-rich tract