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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgctaacctttgaacatgttgtagctcacattcaaggtactactctttattcaagggtttgacatttttgttattcgtccagTTTACCCCTCATCCACATTCAGGGGACAAGTGGTGTATTTATCCAAGTTATGATTATTCTCATTGCATTGTGGATTCTCTTGAAAATATTACACATTCG

Basic information

species Vitis vinifera
transcript Vv01s0011g03740.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: LOC_Os01g09000.1 (Oryza sativa), 3'ss of exon 12
gcaagtgctaacctttgaacatgttgtagctcacattcaaggtactactctttattcaagggtttgacatttttgttattcgtccagTTTACCCCTCATCCACATTCAGGGGACAAGTGGTGTATTTATCCAAGTTATGATTATTCTCATTGCATTGTGGATTCTCTTGAAAATATTACACATTCG
| |||   |     |  |   |||| | |||     || |  | ||  |   ||  |||     | ||| | |  | |  | | ||||| || |||||||||||| | || || |||||||| || |||||||| ||||| ||| |||| ||||| |||||||||||||| || ||||||||||||
gtaagcaatgcaactgaattgtgtttt-gcttg---tctatttcctgataaatacacaa----ctcacactctgatgac-catacagTTCACTCCTCATCCACATGCTGGTGATAAGTGGTGCATCTATCCAAGCTATGACTATGCTCACTGCATGGTGGATTCTCTTGAGAACATTACACATTCG

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: LOC_Os05g08990.1 (Oryza sativa), 3'ss of exon 12
gcaagtgctaacctttgaacatgttgtagctcacattcaaggtactactctttattcaagggtttgacatttttgt---tattcgtccagTTTACCCCTCATCCACATTCAGGGGACAAGTGGTGTATTTATCCAAGTTATGATTATTCTCATTGCATTGTGGATTCTCTTGAAAATATTACACATTCG
      |  |||  ||  ||||  || || |    ||        | || |  | |  ||  ||| | || ||| |   |||     |||||||| |||||||| ||| | || |||||||||| ||| |||||||| ||||| ||| |||||||  | || || ||||||||||| ||||| ||||||
------gtaaacaattcgacattatggagttactgtt--------ttctgtgaagtgtagaatttaatatatttctatatatctacacagTTTACACCTCATCCCCATGCTGGCGACAAGTGGTTTATCTATCCAAGCTATGACTATGCTCATTGTTTGGTTGACTCTCTTGAAAACATTACCCATTCG

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G048012_T01 (Zea mays), 3'ss of exon 11
gcaagtgctaacctttgaacatgttgtagctcacattcaaggtactactctttattcaagggtttgacatttttgttattcgtccagTTTACCCCTCATCCACATTCAGGGGACAAGTGGTGTATTTATCCAAGTTATGATTATTCTCATTGCATTGTGGATTCTCTTGAAAATATTACACATTCG
| |||||  |    |  |     |  ||  |  ||  |||  ||  ||     |   ||  ||||           |   | | ||||| ||||||||||||||| | || || || |||||||| ||||| || ||||| ||| |||||||||| ||||||||||||||||| || || ||||||
gtaagtgacattgctcaactgattattaattttca--caatatataacatcagaactaattgttta----------tgcacatacagTTCACCCCTCATCCACATGCTGGTGATAATTGGTGTATCTATCCGAGCTATGACTATGCTCATTGCATGGTGGATTCTCTTGAAAACATCACGCATTCG

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G032049_T01 (Zea mays), 3'ss of exon 12
gcaagtgctaacctttgaacatgttgtagctcacattcaaggtactactctttattcaagggtttgacatttttgttattcgtccagTTTACCCCTCATCCACATTCAGGGGACAAGTGGTGTATTTATCCAAGTTATGATTATTCTCATTGCATTGTGGATTCTCTTGAAAATATTACACATTCG
| |||||  |    |  |        ||    |  |||| | ||       | |    ||   |    ||| ||  ||  | | ||||| ||||| ||||||||| | || |||||||||||| | ||||| || ||||| ||  |||||||||| ||||||||||||||||| || |||||||||
gtaagtgacagtgctcaactg----ataatctaatttcatgatata-----taacatcagaacta---attgtttatacacatacagTTCACCCCCCATCCACATGCTGGCGACAAGTGGTGTGTCTATCCGAGCTATGACTACGCTCATTGCATGGTGGATTCTCTTGAAAACATCACACATTCG

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA10G41920.2 (Glycine max), 3'ss of exon 13
gcaagtgctaacctttgaacatgttgtagctcacattc-----aaggtactactctttattcaagggtttgacatttttgttattcgtccagTTTACCCCTCATCCACATTCAGGGGACAAGTGGTGTATTTATCCAAGTTATGATTATTCTCATTGCATTGTGGATTCTCTTGAAAATATTACACATTCG
|||||| || | ||   |   | || | ||||| |||      ||| || |  |   | |   | | | ||| ||  ||  |     |  |||||||||| || || ||| | || ||||| |||||||| |||||||||||||||||| | |||||||||||||||||||| || ||||| |||||||| 
gcaagtactcaactac-atttttttattgctcaaatttctaggaagataatgattgatttcttatgatgtga-atgctttctgcat-tttagTTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCT

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA20G25120.2 (Glycine max), 3'ss of exon 13
gcaagtgctaacctttgaacatgttgtagctcacattc------aaggtactactctttattcaagggtttgacatttttgttattcgtccagTTTACCCCTCATCCACATTCAGGGGACAAGTGGTGTATTTATCCAAGTTATGATTATTCTCATTGCATTGTGGATTCTCTTGAAAATATTACACATTCG
| |||| || | ||   |   | || | ||||| |||        || || || | | | |   | |   |||    ||| |   || |  |||||||||| || || ||| | || ||||| |||||||| |||||||||||||||||| | || ||||||||||||||||| || ||||| |||||||| 
gtaagtactcaactgc-atttttttattgctcaaatttctttgggagataataatttatttcttatgacgtgaatgctttctgcatctt--agTTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACACTGCATTGTGGATTCTCTAGAGAATATCACACATTCA

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 3'ss of exon 13
gcaagtg---ctaacctttgaacatgttgtagctcacattcaaggtactactctttattcaagggtttgacatttttgttattcgtccagTTTACCCCTCATCCACATTCAGGGGACAAGTGGTGTATTTATCCAAGTTATGATTATTCTCATTGCATTGTGGATTCTCTTGAAAATATTACACATTCG
|||||||   ||||  |     |  |||  |  | | |   | | |    |||||  ||    | | |||| | ||  |      | |||||  | ||||||||  |  | || |||||||||||||| ||||| |||||||||||| | || |||| ||| ||||||||||| ||||| || ||||||
gcaagtgaaactaaaatcctctctagttacatataaaaagtaggctctctctcttcttttcctg-tctgacttgttaatatgctttgcagTTCGCACCTCATCCTAAGGCTGGTGACAAGTGGTGTATCTATCCGAGTTATGATTATGCCCACTGCACTGTTGATTCTCTTGAGAATATAACGCATTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattcaaggtactactctttattcaagggtttgacatttttgttattcgtccagTTTACCCCTCATCCACATTCAGGGGACAAGTGGTGTATTTATCCAAGTTATGATTATTCTCATTGCATTGTGGATTCTCTTGAAAATATTACACATTCG
                                              ttcgtcc  CT-rich tract
                                  acatttttgttatt  TA-rich tract