1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aatcttaagttattgttgttgttgttattattattattattattattattattatttaatgactattgtattcaatttttaagaactttgcatgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCCTCAGCTAGCTACTGTGTGACCAAGATATTTTGTGCAACGAACATTTTCT
species | Vitis vinifera |
transcript | Vv00s0531g00050.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTTTAGAGCTCAT GCCAGTTGCAAGGTTGGGCCATTCCAAGTTATGAAGAAATTGAGTTGTTCCEST: gi|30301768|gb|CB978562.1|CB978562
genomic: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCATgtaagcattt ... catgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCC
EST: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCAT GCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCCEST: gi|30329769|gb|CD013031.1|CD013031
genomic: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCATgtaagcattt ... catgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCC
EST: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCAT GCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCCEST: gi|110414965|gb|EC980831.1|EC980831
genomic: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCATgtaagcattt ... catgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCC
EST: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCAT GCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCCEST: gi|34362568|gb|CF404153.1|CF404153
genomic: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCATgtaagcattt ... catgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCC
EST: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCAT GCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCCEST: gi|110358833|gb|EC923335.1|EC923335
genomic: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCATgtaagcattt ... catgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCC
EST: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTTTAGAGCTCAT GCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCCEST: gi|34545214|gb|CF513446.1|CF513446
genomic: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCATgtaagcattt ... catgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCC
EST: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCAT GCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCCEST: gi|110381509|gb|EC934651.1|EC934651
genomic: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCATgtaagcattt ... catgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCC
EST: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCAT GCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCCEST: gi|30298600|gb|CB975394.1|CB975394
genomic: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCATgtaagcattt ... catgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCC
EST: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCAT GCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCCEST: gi|110376548|gb|EC941608.1|EC941608
genomic: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCATgtaagcattt ... catgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCC
EST: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCAT GCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCCEST: gi|34546208|gb|CF514440.1|CF514440
genomic: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCATgtaagcattt ... catgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCC
EST: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCAT GCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCCEST: gi|27585769|gb|CB008464.1|CB008464
genomic: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCATgtaagcattt ... catgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCC
EST: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCAT GCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCCEST: gi|110378421|gb|EC943552.1|EC943552
genomic: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCATgtaagcattt ... catgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCC
EST: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCAT GCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCCEST: gi|110395476|gb|EC961142.1|EC961142
genomic: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCATgtaagcattt ... catgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCC
EST: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCAT GCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCCEST: gi|110361851|gb|EC925352.1|EC925352
genomic: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCATgtaagcattt ... catgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCC
EST: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCAT GCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCC
genomic: GGTATCTGCAATGGTGGAGGAGGAGCATCTGCCCTTGTTCTAGAGCTCATgtaagcattt ... catgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCC
ttattattatttaatgactattgtattcaatttttaagaactttgcatgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCCTCAGCTAGCTACTGTGTGACCAAGATATTTTGTGCAACGAACATTTTCT
atttaat putative branch site (score: 4)
attatttaatgactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcttaagttattgttgttgttgttattattattattattattattattattatttaatgactattgtattcaatttttaagaactttgcatgttgcagGCCAGTTGCAAGGTTGGGACATTCCAAGTTATGAAGAAATTGAGTTGTTCCTCAGCTAGCTACTGTGTGACCAAGATATTTTGTGCAACGAACATTTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT