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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggatttacaactgttatcctcttatttttcattcctcttcatatttaccttttctcccagcaattgatcctcatttcttgacttgattgcatcttgttatactatagCTAATGAGGGTCTATGGTGCATTGATGTGGTCACTTGGGAAAGTTTTGAATACTCCCGAGGTTGTGCGAGTTTATATTGG

Basic information

species Vitis vinifera
transcript Vv00s0516g00020.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA17G01310.1 (Glycine max), 3'ss of exon 12
gtaggatttacaactgttatcctcttatttttcattcctcttcatatttaccttttctcccagcaattgatcctcatttcttgacttgattgcatcttgttatactatagCTAATGAGGGTCTATGGTGCATTGATGTGGTCACTTGGGAAAGTTTTGAATACTCCCGAGGTTGTGCGAGTTTATATTGG
    |   | || |  |   |  | || |||    || |||  |||   |  || |     |    ||||  |||| ||||   | |||||  |       ||| | ||||| ||||| || ||||| ||||||||||||||  | ||||||||| |||||||||| || |||||||| || ||||||||
----gtaatgcagc-atcgacaacataatttaacctcatctaaata---aatttgttatttactctttga--ctcacttctatgcctgatttta-------atattgtagCTCATGAGAGTTTATGGAGCATTGATGTGGTCTTTGGGGAAAGTTCTGAATACTCCAGAAGTTGTGCGTGTATATATTGG

upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA07G39450.1 (Glycine max), 3'ss of exon 12
gtaggatttacaactgttatcctcttatttttcattcctcttcatatttaccttttctcccagcaattgatcctcatttcttgacttgattgcatcttgttatactatagCTAATGAGGGTCTATGGTGCATTGATGTGGTCACTTGGGAAAGTTTTGAATACTCCCGAGGTTGTGCGAGTTTATATTGG
    |   | ||  | |   |  |||| |||    |  |||  |||   |  || |     |   |||||  || | ||||   | | |||  |       | | | ||||| ||||| || ||||| ||||||||||||||  | ||||||||| |||||||||| || |||||||| || ||||||||
----gtaatgcag-tatcggcaacttaatttaacctgatctaaata---aatttgttatttactcattga--cttacttctatgcctcatttta-------aaattgtagCTCATGAGAGTTTATGGAGCATTGATGTGGTCTTTGGGGAAAGTTCTGAATACTCCAGAAGTTGTGCGTGTATATATTGG

upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA09G01160.1 (Glycine max), 3'ss of exon 10
gtaggatttacaactgttatcctcttatttttcattcctcttcatat-ttaccttttctcccagcaattgatcctcatttcttgacttgattgcatc-ttgttatactatagCTAATGAGGGTCTATGGTGCATTGATGTGGTCACTTGGGAAAGTTTTGAATACTCCCGAGGTTGTGCGAGTTTATATTGG
                            |         ||  ||||  ||||||  | |  ||  | ||  |     |||    ||||   ||| |  |||| ||| | ||||| ||||| || ||||| ||||||||||||||||| || |||||| | ||||||||||| |||   || || ||||||||
---------------------------gtaagagaatatcaacataggttacctggtttgtca-tatttattatcttttttgctacttacatgcctaattgtgatattgtagCTTATGAGAGTTTATGGAGCATTGATGTGGTCACTGGGTAAAGTTCTAAATACTCCCGAAGTTACACGTGTATATATTGG

upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA15G11970.1 (Glycine max), 3'ss of exon 11
gtaggatttacaactgttatcctcttatttttcattcctcttcatatttaccttttctcccagcaattgatcctcatttcttgacttgattgcatcttgttatactatagCTAATGAGGGTCTATGGTGCATTGATGTGGTCACTTGGGAAAGTTTTGAATACTCCCGAGGTTGTGCGAGTTTATATTGG
        ||  ||    |||  | ||  || | |   |  |||||||||   | |  |           |  | || |  | || ||  |     || | ||| | ||||| ||||| || ||||| ||||||||||||||||| || |||||| | |||||||| || |||   || || || || ||
-------gtaagacaac-atcaacataggttacctggtttatcatatttattatctaac-----------tttttatctacttacatgcctaa---ttataatattgtagCTTATGAGAGTTTATGGAGCATTGATGTGGTCACTGGGTAAAGTTCTAAATACTCCTGAAGTTACACGTGTATACATAGG

upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT4G05520.1 (Arabidopsis thaliana), 3'ss of exon 12
gtaggatttacaactgttatcctcttatttttcattcctcttcatatttaccttttctcccagcaattgatcctcatttcttgacttgattgcatcttgttatactatagCTAATGAGGGTCTATGGTGCATTGATGTGGTCACTTGGGAAAGTTTTGAATACTCCCGAGGTTGTGCGAGTTTATATTGG
                         ||  |||| ||  || ||  ||| |  | || |      ||     | |||||| |   | |  |||   |   || | ||| |||||||||| || ||||| |||||||||||||| ||||| |||||  |||| || || ||||| || || || ||||||||
------------------------gtaagtttcgttt-tcgtcccattcatttgttatgttcataag----cttcatttttactcattgttgagccgcttttt-ctaaagCTAATGAGAGTGTATGGAGCATTGATGTGGTCGCTTGGTAAAGTCCTGAACACACCAGAGGTCGTACGTGTCTATATTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcccagcaattgatcctcatttcttgacttgattgcatcttgttatactatagCTAATGAGGGTCTATGGTGCATTGATGTGGTCACTTGGGAAAGTTTTGAATACTCCCGAGGTTGTGCGAGTTTATATTGG
                                       tcttgtt  CT-rich tract
                                            ttatactata  TA-rich tract