Sequence
atgc intronic sequence ATGC exonic sequence...tcttctggatagacaattaacattttcttatatcatatattggatgtattacttcaactgtatttttctgtgcatgaactgaaacttgaattctttgcagAAACCTGATGACACGATCAATTTTGATGTTAGTGAACCAGTTGTCATTCTTGGATTTGGACAAATGGGTCAGGTACATCATTTTTATGAATTAAGTTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA07G30360.2 (Glycine max), 3'ss of exon 14
tcttctggatagacaattaacattttcttatatcatatattgga----tgtattacttcaactgtatttt---tctgtgcatgaactgaaacttgaattctttgcagAAAC------CTGATGACACGATCAATTTTGATGTTAGTGAACCAGTTGTCATTCTTGGATTTGGACAAATGGGTCAGGTACATCATTTTTATGAATTAAGTTAG
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------aaacaaaatagaactgtttcttcacaatatgtgtggcaatcttatgccacagtgatttcattttaacttcaagtttacattgagtact-aattatttgcagAAACAGAATGCTTCTGAGACGGTTAACTTCAATGTTAGTGAACCTGTTGTTATCCTTGGATTTGGACAAATGGGCCAG---------------------------
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G06890.3 (Glycine max), 3'ss of exon 13
tcttctggatagacaatt-aacattttcttatatcatatattggatg-tattacttcaactgtatttttctg--tgca----tgaactgaaacttgaattctttgcagAAAC------CTGATGACACGATCAATTTTGATGTTAGTGAACCAGTTGTCATTCTTGGATTTGGACAAATGGGTCAGGTACATCATTTTTATGAATTAAGTTAG
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-------aaaacaaaatggaacattttctt-cactatatgtgtgacaatcttatgccagtgatttcattttaactgcaagtttacattgagtactaaattatttgcagAAACAGAATGTTTCTGAGACGGTTAACTTCAACATTAGTGAACCCGTTGTTATCCTTGGATTTGGACAAATGGGCCAG---------------------------
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 3'ss of exon 13
tcttctggatagacaattaacattttcttatatcatatattggatgtattacttcaactgtatttttctgtgcatgaactgaaacttgaattctttgcagAAACCTGATGACACGATCAATTTTGATGTTAGTGAACCAGTTGTCATTCTTGGATTTGGACAAATGGGTCAGGTACATCATTTTTATGAATTAAGTTAG
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--------gta-acttttaa-attttctacttttgcat-ttatatgaaaaataaaatttgcattcatct-tgaatctgttgacaattg-------tgcagAAAATAGGTGAAGATGTGAACTTCGATGTTAGTGAATCAATTGTCATCATTGGATTTGGACAAATGGGTCAG--------------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtattacttcaactgtatttttctgtgcatgaactgaaacttgaattctttgcagAAACCTGATGACACGATCAATTTTGATGTTAGTGAACCAGTTGTCATTCTTGGATTTGGACAAATGGGTCAGGTACATCATTTTTATGAATTAAGTTAG
ttctttgc CT-rich tract
tgtattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcttctggatagacaattaacattttcttatatcatatattggatgtattacttcaactgtatttttctgtgcatgaactgaaacttgaattctttgcagAAACCTGATGACACGATCAATTTTGATGTTAGTGAACCAGTTGTCATTCTTGGATTTGGACAAATGGGTCAGGTACATCATTTTTATGAATTAAGTTAG
-cttctgg
- - - - atagacaa
- - - - - - - - - - - - - - - - - - - - tggatgt
- - - - - - - - - - - - - - - - - - - - - - - - - -cttcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaaac