1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ctgtcccttatcttaagaaaccttgttctgttgcttgtgtatttgataacgcttctaaagtttctctatggttgataaattcctttttctggtctttcagAGTTTCTGAATGTAGATGATGATGAAGTGGCTGATGATGATGACTATATGCCTTCTGCTGAAGAAAATCGCTTTCTTGAGAACAGTGGATGGTCTTCCCG
species | Vitis vinifera |
transcript | Vv00s0220g00080.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GATTTTGCGAACATAACAGTTGGGCATGATACAG AGTTTCTGAATGTAGATGATGATGAAGTGGCTGATGATGATGACTATATGCEST: gi|32272378|gb|CD721537.1|CD721537
genomic: GATTTTGCGAACATAACAGTTGGGCATGATACAGgttcacttct ... ggtctttcagAGTTTCTGAATGTAGATGATGATGAAGTGGCTGATGATGATGACTATATGC
EST: GATTTTGCGAACATAACAGTTGGGCATGATACAG AGTTTCTGAATGTAGATGATGATGAAGTGGCTGATGATGATGACTATATGCEST: gi|34549915|gb|CF518147.1|CF518147
genomic: GATTTTGCGAACATAACAGTTGGGCATGATACAGgttcacttct ... ggtctttcagAGTTTCTGAATGTAGATGATGATGAAGTGGCTGATGATGATGACTATATGC
EST: GATTTTGCGAACATAACAGTTGGGCATGATACAG AGTTTCTGAATGTAGATGATGATGAAGTGGCCGATGATGATGACTATATGCEST: gi|28963280|gb|CB342313.1|CB342313
genomic: GATTTTGCGAACATAACAGTTGGGCATGATACAGgttcacttct ... ggtctttcagAGTTTCTGAATGTAGATGATGATGAAGTGGCTGATGATGATGACTATATGC
EST: GATTTTGCGAACATAACAGTTGGGCATGATACAG AGTTTCTGAATGTA
genomic: GATTTTGCGAACATAACAGTTGGGCATGATACAGgttcacttct ... ggtctttcagAGTTTCTGAATGTA
ataacgcttctaaagtttctctatggttgataaattcctttttctggtctttcagAGTTTCTGAATGTAGATGATGATGAAGTGGCTGATGATGATGACTATATGCCTTCTGCTGAAGAAAATCGCTTTCTTGAGAACAGTGGATGGTCTTCCCG
ttcctttttctggtct CT-rich tract
ataaattccttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtcccttatcttaagaaaccttgttctgttgcttgtgtatttgataacgcttctaaagtttctctatggttgataaattcctttttctggtctttcagAGTTTCTGAATGTAGATGATGATGAAGTGGCTGATGATGATGACTATATGCCTTCTGCTGAAGAAAATCGCTTTCTTGAGAACAGTGGATGGTCTTCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
ctgtccc
- - - - - - - -agaaacc
- - - - - - - - - - - - - - - - gcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctatg