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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagagtttttgttgatcacatggtgcttgtgtgatttttatttaagttttacttgatctgctctcttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAGTAGCAGAATACTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGC

Basic information

species Vitis vinifera
transcript Vv00s0211g00120.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA18G27710.1 (Glycine max), 3'ss of exon 14
--gtagagtttttgttgatcacatggtgcttgtgtgatttttatttaagttttacttgatctgctctcttgc-ttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAGTAGCAGAATACTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGC
    |   | ||||||| |   ||  |  || |    |||| ||| |    |||| |||| |    | | |  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| || || ||||   |||| |||||||| |||| 
gtacaagctctttgttgcttctattataatttttatgttttaattca---cttacatgatttctcttgtggaattcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAGGTAGCAGAGTTCTTTGATGCAGCAGTGAAGTTGGCTGTGAAGATTAAGGG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 13
--gtagagtttttgttgatcacatggtgcttgtgtgatttttatttaagttttacttgatctgctctcttgc-ttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAGTAGCAGAATACTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGC
    ||  | ||||||| |    |     || |    | || | | |    |||| |||| |    | | |  ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |  ||||| || || ||||   | || |||||||| |||| 
gtacaggctctttgttgcttctgttaccatttttatgtcttcagtcag---ttacatgatttctcttgtggaattcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTCAAGGTAGCAGAGTTTTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA09G33480.1 (Glycine max), 3'ss of exon 13
--gtagagtttttgttgatc-acatggtgcttgtgtgatttttatttaagttttacttgatct-----gctctcttg--cttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAGTAGCAGAATACTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGC
   ||| || || |||| |  | ||  || || ||   |  ||||| |   ||||||||||||     | |||  ||   ||||||||| ||||||||||||||||| ||||||| |||||||||||||||||  || ||||| |  ||||| || ||||| |   | || |||||||||||| |
gtatagggtcttcgttgttttatattttgattttggtgtcattattca---tttacttgatcttaatagttctagtggatttcagGAACTCCTGCTCTTACTTCTAGGGGATTTGCTGAGGAGGATTTTGTTATGGTGGCAGAGTTTTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352781461|gb|FQ468305.1|FQ468305
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352781319|gb|FQ467765.1|FQ467765
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|110709476|gb|EE084971.1|EE084971
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352768597|gb|FQ467809.1|FQ467809
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|110363542|gb|EC927137.1|EC927137
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|33407197|gb|CF212824.1|CF212824
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|349827018|gb|FQ419109.1|FQ419109
EST:     CACCGTTCCTGGAGATGTGTCGGCCACGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGGGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|32270628|gb|CD719787.1|CD719787
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|29785535|gb|CB342622.2|CB342622
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352769659|gb|FQ468587.1|FQ468587
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352780960|gb|FQ466273.1|FQ466273
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|110361521|gb|EC925002.1|EC925002
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|30299391|gb|CB976185.1|CB976185
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352763948|gb|FQ465398.1|FQ465398
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352769305|gb|FQ471454.1|FQ471454
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352777762|gb|FQ466815.1|FQ466815
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|110379633|gb|EC944843.1|EC944843
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|29784993|gb|CB341601.2|CB341601
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|27755145|gb|CB035900.1|CB035900
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|27578509|gb|CB001204.1|CB001204
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|32250249|gb|CD716068.1|CD716068
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|110383823|gb|EC948224.1|EC948224
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|351030429|gb|FQ432367.1|FQ432367
EST:     CACCGTTCCTGGAGATGTGTCGGCCACGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGGGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352781813|gb|FQ469111.1|FQ469111
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352780984|gb|FQ466297.1|FQ466297
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|30133417|gb|CB918756.1|CB918756
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|45771466|gb|CN007318.1|CN007318
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|110361068|gb|EC924521.1|EC924521
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|83275764|gb|DV939772.1|DV939772
EST:     CACCGTTCCNGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|351016424|gb|FQ423851.1|FQ423851
EST:     CGCCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352773362|gb|FQ470949.1|FQ470949
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|110373188|gb|EC937406.1|EC937406
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACCTCTAGAGGATTTGTTGAGGAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAG
EST: gi|352777748|gb|FQ466801.1|FQ466801
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352768238|gb|FQ469413.1|FQ469413
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|33407112|gb|CF212739.1|CF212739
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352768986|gb|FQ468177.1|FQ468177
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|110363609|gb|EC927210.1|EC927210
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|110413717|gb|EC979522.1|EC979522
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352765218|gb|FQ465915.1|FQ465915
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGGGGCATCCGGATGG                         GAACCCCTGCTTTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352774202|gb|FQ474725.1|FQ474725
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352781311|gb|FQ467757.1|FQ467757
EST:     CACCGTTCCNGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|351029249|gb|FQ435449.1|FQ435449
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCGTCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352767846|gb|FQ466055.1|FQ466055
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|32246995|gb|CD712814.1|CD712814
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352776557|gb|FQ474859.1|FQ474859
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352782190|gb|FQ470092.1|FQ470092
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|29785493|gb|CB342547.2|CB342547
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352773661|gb|FQ472443.1|FQ472443
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352772663|gb|FQ472138.1|FQ472138
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|351053957|gb|FQ441723.1|FQ441723
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352769248|gb|FQ471397.1|FQ471397
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352772602|gb|FQ472077.1|FQ472077
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|29785469|gb|CB342488.2|CB342488
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTTTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|351013925|gb|FQ434077.1|FQ434077
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGGGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|30299312|gb|CB976106.1|CB976106
EST:     CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
EST: gi|352768543|gb|FQ467499.1|FQ467499
EST:     CACCGTTCCNGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGG                         GAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG
genomic: CACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTGGCATCAGGATGGgtagagtttt ... cttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggtgcttgtgtgatttttatttaagttttacttgatctgctctcttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAGTAGCAGAATACTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGC
                               acttgat  putative branch site (score: 5)
                                     tctgctctcttgcttc  CT-rich tract
              atttttatttaagttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagagtttttgttgatcacatggtgcttgtgtgatttttatttaagttttacttgatctgctctcttgcttcagGAACCCCTGCTCTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAGTAGCAGAATACTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA