Sequence
atgc intronic sequence ATGC exonic sequence...tcttgcaagttgcaagggaaagtgaatggtatcatgccaatccagtccctattaattctcaaatatacattcatatcctcttgtttcctgttggttacagGGTCATCAATATGAGACAGTATCAGGTTTTATCTGTGAGGTATTTGGGTATATCCCAAGGACTGGTGAGAGCATAAAGGTGGTACTTGAAAATCAAGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA14G01920.1 (Glycine max), 3'ss of exon 13
-----------------------------------------------tcttg-----caagttgcaagggaaagtgaatggtatcatgccaatc-----------cagtccctatt---aattctcaaatatacattcatatcctcttgtttcctgttgg---------ttacagGGTCATCAATATGAGACAGTATCAGGTTTTATCTGTGAGGTATTTGGGTATATCCCAAGGACTGGTGAGAGCATAAAGGTGGTACTTGAAAATCAAGAAG
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gtgcaactgagaaatttatgctgataactactgttgggtttcatgaatcctggggtttagatttgagttgagacaccatgatctcatttgaattaattttgcttacaattcatattgctaagtctgatgaagactttcaggcctcctgatacgtaggtgacatctgctatttcagGGTCACCAATATGAGACGGTATCAGGCTTTGTGTGTGAAGCATTTGGATACATTCCAAGGACAGGTGAGTGCATCAAAGTAGTTCTTGAAAGGGAAGATG
upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA02G46780.1 (Glycine max), 3'ss of exon 12
tcttgcaagttgcaagggaaagtgaatggtatcatgccaat--ccagtccctattaattctcaaatatacattcatatcctcttgtttcctgttggttacagGGTCATCAATATGAGACAGTATCAGGTTTTATCTGTGAGGTATTTGGGTATATCCCAAGGACTGGTGAGAGCATAAAGGTGGTACTTGAAAATCAAGAAG
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-caatcagctcattggaattaattttccttactgttcatattgctaagtctgatgaagaatttcaggcttcttgatacttaggtgacatctgctattt-cagGGTCACCAATATGAGACGGTATCAGGCTTTGTGTGTGAAGCATTTGGATACATTCCAAGGACAGGTGAGTGCATCAAAGTAGTTCTTGAAAGGGAAGATG
upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT1G55930.1 (Arabidopsis thaliana), 3'ss of exon 12
-tcttgcaagttgcaagggaaagtgaatggtatcatgcca--------atccagtcccta---ttaattctcaaatatacattca-tatcctcttgtttcctgttggttacagGGTCATCAATATGAGACAGTATCAGGTTTTATCTGTGAGGTATTTGGGTATATCCCAAGGACTGGTGAGAGCATAAAGGTGGTACTTGAAAATCAAGAAG
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gtaatatactctgtagccgtgtctttagtgtgtccctctagaaggaagaaccgatctttaagattgcttgttggcagagtataaactatccttttgtttcccttt--tcgcagGGCCATCAGTATGAGACAGTCTCAGGTTTTGTCTGTGAGGCCTTTGGGTATATCCCAAAGACAGGTGAGAGTGTGACGGTAGTTCTTGAAAAGGAAAACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71871934|gb|DT020989.1|DT020989EST: ATACATCAATTGATCAGCTCTCTGAAGATCTCAATATCAAAATGCCAGAG GGTCATCAATATGAGACAGTATCAGGTTTTATCTGTGAGGTATTTGGGTAT
genomic: ATACATCAATTGATCAGCTCTCTGAAGATCTCAATATCAAAATGCCAGAGgtattttatt ... ttggttacagGGTCATCAATATGAGACAGTATCAGGTTTTATCTGTGAGGTATTTGGGTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tccctattaattctcaaatatacattcatatcctcttgtttcctgttggttacagGGTCATCAATATGAGACAGTATCAGGTTTTATCTGTGAGGTATTTGGGTATATCCCAAGGACTGGTGAGAGCATAAAGGTGGTACTTGAAAATCAAGAAG
tattaat putative branch site (score: 2)
tcctcttgtttcctgt putative PPT
attaattctcaaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcttgcaagttgcaagggaaagtgaatggtatcatgccaatccagtccctattaattctcaaatatacattcatatcctcttgtttcctgttggttacagGGTCATCAATATGAGACAGTATCAGGTTTTATCTGTGAGGTATTTGGGTATATCCCAAGGACTGGTGAGAGCATAAAGGTGGTACTTGAAAATCAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
-cttgcaa
- - - - - - - agggaaa
- - - - - - - - - - - tgaatgg
- - - - - - - - - - - - - - - atcatgc
- - - - - - - - - - - - - - - - - - -caatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatata