1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttcgtctgttctaccctgttaaagtttgggcatgctgttgtcatttctcatttgggttattggcttattcctagctgtaagaaactgatcatcattgaacaaaaaggaatggaaagcatgtataacttttttctttttcttccacattgtatagGTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACATGCAGAGATTGAGTACAAAACCAGGTGAAAGAAAGCTGGGTTTGAAGATC
species | Vitis vinifera |
transcript | Vv19s0090g01210.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AATTCAAACGTCATGAACAAGAATACGATGAAGAGCGTATTAGAGAACAG GTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACATEST: gi|254915760|gb|GR905191.1|GR905191
genomic: AATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAGgttcgtctgt ... cattgtatagGTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACAT
EST: AATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAG GTTCAAGAGGTGCTGGAAGGGGCGAAGGTCCTTGAATGGTTAAAAGAACATEST: gi|71868474|gb|DT017529.1|DT017529
genomic: AATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAGgttcgtctgt ... cattgtatagGTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACAT
EST: AATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAG GTTCAAGAGGTGCTGGAAGGNGCGAAGGTCCTTGAATGGTTAAAAGAACATEST: gi|351056173|gb|FQ453635.1|FQ453635
genomic: AATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAGgttcgtctgt ... cattgtatagGTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACAT
EST: AATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAG GTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACATEST: gi|351040007|gb|FQ425093.1|FQ425093
genomic: AATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAGgttcgtctgt ... cattgtatagGTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACAT
EST: AATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAG GTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACATEST: gi|254915870|gb|GR905301.1|GR905301
genomic: AATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAGgttcgtctgt ... cattgtatagGTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACAT
EST: AATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAG GTTCAAGAGGTGCTGGAAGGGGCGAAGGTCCTTGAATGGTTAAAAGAACATEST: gi|30320634|gb|CD003896.1|CD003896
genomic: AATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAGgttcgtctgt ... cattgtatagGTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACAT
EST: AATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAG GTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACATEST: gi|110405973|gb|EC971531.1|EC971531
genomic: AATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAGgttcgtctgt ... cattgtatagGTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACAT
EST: AATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAG GTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACAT
genomic: AATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAGgttcgtctgt ... cattgtatagGTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACAT
caaaaaggaatggaaagcatgtataacttttttctttttcttccacattgtatagGTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACATGCAGAGATTGAGTACAAAACCAGGTGAAAGAAAGCTGGGTTTGAAGATC
gtataac putative branch site (score: 3)
cttttttctttttctt CT-rich tract
atgtataacttttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtctgttctaccctgttaaagtttgggcatgctgttgtcatttctcatttgggttattggcttattcctagctgtaagaaactgatcatcattgaacaaaaaggaatggaaagcatgtataacttttttctttttcttccacattgtatagGTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACATGCAGAGATTGAGTACAAAACCAGGTGAAAGAAAGCTGGGTTTGAAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA