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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatttgtgctgctaattagttttataggttattttatagatatttcactacatattattgtttagtgtcttttgacagacatttaacttgctttctgattggctttgtattgtagCTTATGAGGGTTTATGGAGCACTGATGTGGTCACTTGGGAAGGTTCTAAATACTCCTGAGGTTATGCGTGTTTATATTGG

Basic information

species Vitis vinifera
transcript Vv19s0090g01130.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g01130.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA02G46350.1 (Glycine max), 3'ss of exon 12
gtaagaatttgtgctgctaattagttttataggttattttatagatatttcactacatattattgtttagtgtcttttgacagacatttaacttgctttctgattggctttgtattgtagCTTATGAGGGTTTATGGAGCACTGATGTGGTCACTTGGGAAGGTTCTAAATACTCCTGAGGTTATGCGTGTTTATATTGG
||||||  |||||  |  ||       | |   | || || |  || |||||| || |      ||   |||           | || |||| |   ||      |||| | |  || || | |||||||||||||||||  | |||||||||||||||||||| || || || ||||| || ||||| || ||||||||
gtaagagcttgtgtagtcaaacttccgtttttttaatcttttgaatctttcacaacctg-----gtccggtg-----------aaatctaacctatattg-----ggctctatggtgcagTTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGG

upper sequence: Vv19s0090g01130.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT3G20290.2 (Arabidopsis thaliana), 3'ss of exon 12
-gtaagaatttgtgctgctaattagttttatagg-ttattttatagatatttcactacatatt--attgtttagtgtcttttgacagacatttaacttgctttctgattggctttgtattgtagCTTATGAGGGTTTATGGAGCACTGATGTGGTCACTTGGGAAGGTTCTAAATACTCCTGAGGTTATGCGTGTTTATATTGG
  | |  |||   ||  || ||  ||| |  |   ||||||  |   |  ||    || | ||  |||||||    | || | | | |  ||||    |  ||     |    ||||||   |||| |||||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||||    ||||| || |||||
gttgaccattgacgcc-ctgatcggttatcgattcttatttcgttccttctttcacacttctttcattgttttacatgttcttatacatttttacaccgtctttctccttatcttgtat---agCTAATGAGGGTATATGGAGCTCTCATGTGGTCACTTGGGAAAGTTCTCAATACTCCTGAGGTCTCTCGTGTCTACATTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagtgtcttttgacagacatttaacttgctttctgattggctttgtattgtagCTTATGAGGGTTTATGGAGCACTGATGTGGTCACTTGGGAAGGTTCTAAATACTCCTGAGGTTATGCGTGTTTATATTGG
                                ttctgat  putative branch site (score: 3)
                    atttaactt  TA-rich tract