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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcagtattttcattatctatttcttcagctgatctcatcttttcttttattacatgtcctgaactgcctttttcagGTGAAGACCGGAAAGACCAGCTTAGAACAGATTTCAAGAGTTTATGGAAACCAG

Basic information

species Vitis vinifera
transcript Vv19s0090g00810.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA18G12920.1 (Glycine max), 3'ss of exon 14
gtat-gcagtattttcattatctatttct--tcagctgatctcatcttt---tcttttattacatgtcctgaactgcctttttcagGTGAAGACCGGAAAGACCAGCTTAGAACAGATTTCAAGAGTTTATGGAAACCAG
|||| | | |     |||    | |||||  | |  ||| || || | |   ||  || | |  | ||     |||   | || |||| ||||| || ||||||||||| || ||||| |||||||||||||| || |||
gtattgaactcaacccatagcttgtttctagttacatgaactaatatatgtgtcacttctgatgtttctatggctgtaatgtttagGTAAAGACTGGGAAGACCAGCTTGGAGCAGATATCAAGAGTTTATGGGAATCAG

upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA18G10460.1 (Glycine max), 3'ss of exon 14
gtat-gcagtattttcattatctatttct--tcagctgatctcatcttt---tcttttattacatgtcctgaactgcctttttcagGTGAAGACCGGAAAGACCAGCTTAGAACAGATTTCAAGAGTTTATGGAAACCAG
|||| | | |     |||    | |||||  | |  ||| || || | |   ||  || | |  |  |     |||     || |||| ||||| || ||||||||||| || ||||| |||||||||||||| || |||
gtattgaactcaacccatagcttgtttctagttacatgaactaatatatgtgtcacttctgatgttcctatggctgttacgtttagGTAAAGACTGGGAAGACCAGCTTGGAGCAGATATCAAGAGTTTATGGGAATCAG

upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT4G26900.1 (Arabidopsis thaliana), 3'ss of exon 13
--------------gtatgcagtattttcattatctatttcttcagctgatctc----atcttttcttttattacatgtcc-tgaactgccttttt-cagGTGAAGACCGGAAAGACCAGCTTAGAACAGATTTCAAGAGTTTATGGAAACCAG
              |   |    ||||     |  | ||| |   |||  | ||    | |       | |||  ||  || |   | || |||||  |||||||||| |||||||  || ||||||||||| || |||||||||||||| |||
gtaagtttgtagttgcccgtctaatttatccgagttgtttttcatgctagtatctaaaaacggaaggatcattttatccccattttccgcgtttttgtagGTGAAGACAGGAAAGAGTAGTTTAGAACAGATATCCAGAGTTTATGGAAATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcagctgatctcatcttttcttttattacatgtcctgaactgcctttttcagGTGAAGACCGGAAAGACCAGCTTAGAACAGATTTCAAGAGTTTATGGAAACCAG
     agctgat  putative branch site (score: 4)
                                          ctgcctttttc  putative PPT
               atcttttcttttatta  TA-rich tract